Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1150 ATGTCCCGCTCTCTACTCCGAGCTCTCCCTTTCTCCACTCTTCAATTTCTCCCCATTTCCTCTCTCATTTCCCATCTCCATCTCCCCAAAACCATTTCCAGAATCCACAGCCCCGTTTCGTTCCCCTCTTCCGCTACCGAAACGCTCGCTCCCAGTTCGAATTCCCAGTCGCCTCTTAAAGACTCTCTCCAGTGGATCAATCGTACTGCGTTGTGCGGTGAATTGTCGGGTGCCGATGTCGGGAAGCGGGTTCGGCTCTGTGGTTGGGTTGCTCTGCATAGGGTTCATGGGGGTTTGACGACCACAGTGGTATCGTTCAGGTTTGTTGATTCTTATGTTGTTGCTGTTGAAGGCATTGTGACGTCTCGGCCTGGCGATTCCGTTAATGACAAAATGAAAACTGGCTTCATAGAGCATGTTCAAATCTTAAATCCCGTTGGATCGAAGTTACCTTTTTTAGTTGCAATGGCTGATGATGCAAAAGATTATTTGAGTATTTATAGGTACCGATACCTTGATCTTCGGAGGAAGAAAATGAGTTTTAACATAATGCTTCGACATAAAGTACTCATTCGAAGATATCTAGAGGATGTACATGATTTTGTGGAGATTGAGACACCAATACTTTCTAGATCTACTCCAGAAGGTGCTCGAGATTATCTGGTGCCATCTAGAGTTCAGGTAGCCTATGAACAAATCATATTTGCACCTTCAATTTCATTATGGGCTTATGGCTTTCTTTGTAGGTGTTTCCGAGATGAAGACCTACGAGCTGACAGACAACCTGAGTTTACACAACTTGATATGGAATTGGCATTTACAACTTTGGAAGACATGCTGAAACTTAATGAAGATTTGATTAGAAAGGTTTTTTGGGAAGTCAGAGGTGTTCAGCTGCCAAATCCTTTCCCGAGGCGTACCTATGCTGAAGCAATGACTATTGATAGATTTTCTTATTTAAATTGCAGGTGTCGGATATTTTTGCAGATTCTACATTCAAGGTTTTTGCAGACGCCTTGTCTAGTGGTGGAATTATCAAAGTGCTGTGCGTCCTCTGGTGCTAAAAGATATTCAAACACAGCTCTGAAAAAAGGTGACATTTATTCGGAGGCAAACAAATCTGGAGCTAAAGGATTACCTTTTCTAAAAGTTCTAGATGATGGTGTCATTGAAGGAATTCCTGTTCTAGTGTCAAGTTTGGATCCTGCAGGTAGAGAGGAATTTCTGAGACGATGCTCTGCTGGACCTGGTGATCTAGTCTTACTATATGTAGCTCAAGACCTGGGTTTGGTTGACCACGTGATAACAGATTTCCCAATGTTCGAATGGAATGATCTAGAGGAACGACTCGAGGCCTTGCACCACCCTTTTACAGCTCCAAACCCTGAAGATGTTGATGATCTACCCTCTGCTCGTGCTTTAGCATATGATATGGTTTACAATGGAGTAGAGATTGGTGGAGGGAGTTTGAGAATTCATAAACGTGAAGTGCAAGAGAAGGTTTTGGAGATTGTGGGAATCTCTCCTGAACAGGCAGAAACGAAGTTTGGTTATCTATTAGAGGCATTGGAAATGGGTGCCCCCCCTCACGGAGGTATTGCTTTTGGATTGGACAGATTAGTTATGTTATTAGCAGATGCAAATTCCATTAGGGATGTCATAGCTTTCCCAAAGACAACAACAGCACAATGTGCCCTTACAAAAGCTCCTTCAGAAGTGGATCTACAACAACTCAAGGATTTATCATATCAGAGCCTGAATCAATAG 1767 43.07 MSRSLLRALPFSTLQFLPISSLISHLHLPKTISRIHSPVSFPSSATETLAPSSNSQSPLKDSLQWINRTALCGELSGADVGKRVRLCGWVALHRVHGGLTTTVVSFRFVDSYVVAVEGIVTSRPGDSVNDKMKTGFIEHVQILNPVGSKLPFLVAMADDAKDYLSIYRYRYLDLRRKKMSFNIMLRHKVLIRRYLEDVHDFVEIETPILSRSTPEGARDYLVPSRVQVAYEQIIFAPSISLWAYGFLCRCFRDEDLRADRQPEFTQLDMELAFTTLEDMLKLNEDLIRKVFWEVRGVQLPNPFPRRTYAEAMTIDRFSYLNCRCRIFLQILHSRFLQTPCLVVELSKCCASSGAKRYSNTALKKGDIYSEANKSGAKGLPFLKVLDDGVIEGIPVLVSSLDPAGREEFLRRCSAGPGDLVLLYVAQDLGLVDHVITDFPMFEWNDLEERLEALHHPFTAPNPEDVDDLPSARALAYDMVYNGVEIGGGSLRIHKREVQEKVLEIVGISPEQAETKFGYLLEALEMGAPPHGGIAFGLDRLVMLLADANSIRDVIAFPKTTTAQCALTKAPSEVDLQQLKDLSYQSLNQ 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8618891 8629684 + Sed0011100.1 Sed07g1150 720014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1150 588 SUPERFAMILY Nucleic acid-binding proteins 68 138 IPR012340 -
Sed07g1150 588 PRINTS Aspartyl-tRNA synthetase signature 242 255 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Sed07g1150 588 PRINTS Aspartyl-tRNA synthetase signature 476 492 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Sed07g1150 588 PRINTS Aspartyl-tRNA synthetase signature 520 534 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Sed07g1150 588 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 249 557 IPR006195 -
Sed07g1150 588 SUPERFAMILY Class II aaRS and biotin synthetases 161 585 IPR045864 -
Sed07g1150 588 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 52 560 - GO:0004815(PANTHER)|GO:0005739(PANTHER)|GO:0006422(PANTHER)
Sed07g1150 588 Pfam GAD domain 352 424 IPR029351 -
Sed07g1150 588 NCBIfam aspartate--tRNA ligase 108 584 IPR004524 GO:0005524(InterPro)|GO:0016874(InterPro)
Sed07g1150 588 Gene3D Bira Bifunctional Protein; Domain 2 151 358 IPR045864 -
Sed07g1150 588 Gene3D Bira Bifunctional Protein; Domain 2 425 588 IPR045864 -
Sed07g1150 588 Gene3D - 60 105 IPR012340 -
Sed07g1150 588 Pfam tRNA synthetases class II (D, K and N) 167 559 IPR004364 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1150 K01876 - - csv:101202872 813.913
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g0414 Sed-Chr13:2717049 Sed07g1150 Sed-Chr7:8618891 3.50E-231 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g777 . Blo03g00057 Bda06g01152 . Bpe07g00295 . . Bma12g00306 . . . . . . . . . . . . . . . . Cla10g00957 Cam10g0980 Cec10g1011 Cco10g0974 Clacu10g1002 Cmu10g1784 Cre10g1158 . . Cone3ag1050 Cone10ag1066 . . . . . . . . . . . . Sed07g1150 Cmo04g00458 Cmo16g00319 . . . . Cpe14g00249 Cpe01g00384 Bhi11g01096 Tan01g0600 Cmetu07g2217 . . Mch10g0404 . . . . . . . . Lsi03g01002 . . Cme07g02215
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009118 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34