Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1158 ATGGCGGCTACGCACAGTTTATCTTCCGCCGCACTCTCATCATCTTCATCTGCTTTCTTCGCCCATTCCAGATTCAATGCCAAGAATTCATCGGTATCGTTGCCGGCAAAACCCGCCGGCGTTTGCAAGTGTGTTGCTACTTCTCAAGATTCAACAACAGCATATAAAACAGCGGTTTCTCGAAATGCGAACATGGCCAAACTTCAAGCTGGATACCTTTTTCCCGAGATTGCAAGGAGAAGGAATGCACATTTGCTCAAGTATCCTGATGCGAAAGTAATTAGCCTTGGAATTGGTGACACTACTGAGCCTATTCCTGAGGTTATTACTTTGGCCATGGCAAAGAGATCACATGCGTTGTCCACACTGGAGGGTTACAGTGGCTATGGAGCTGAGCAAGGCGAAAAGTCAGTGAGAACTTTACTTGGCAAAACATTTTATAGCGACCTTGGCATAGAAGAAGATGATATCTTTGTCTCTGATGGCGCAAAGTGTGACATAACACGCCTTCAGCTTGTTTTTGGATCCGACGTGTCAATGGCGGTGCAAGACCCATCATACCCGGCTTATGTAGACTCAAGCGTCATCTTGGGGCAGACAGGACTGTACCAGAAGGATATTGAAAAGTATGGCAATATTGAATACATGAGGTGTACACCAGAAAATGGATTTTTTCCCGATTTATCAAAGGTTCCCCGGACAGATATCATATTTTTCTGTTCACCAAACAATCCTACCGGCTCTTCTGCAACCAGGGAGCAGTTAACCCAACTGGTGCAGTTTGCTAAAAAGAATGGGTCGATCATAGTCTATGATTCTGCATATGCAATGTATATATCAGATGATAATCCAAAATCTATCTTCGAAATTCCTGGAGCAAAGGAGGTTGCAATTGAGACATCATCATTTAGCAAATATGCTGGATTTACTGGAGTTCGTCTTGGTTGGACGGTTGTTCCGAAGGAGCTCCTGTTTTCTGATGGATTTCCCGTTGCTAAAGATTTCAACCGTATTGTTTGCACTTGCTTCAACGGTGCATCCAACATTGCCCAAGCTGGGGGCTTGGCCTGTCTTTCCCCAGAAGGGCTCGAGGCTATGCGTGGGGTAATCGGGTTTTACAAAGAAAACACCAGTATCATATTGGACACATTCAACTCACTTGGATTTAATGTGTATGGAGGGAAGAATGCACCATACGCATGGGTTCATTTCCCTGGCTGGAGTTCGTGGGATGTATTTGCTGAGATACTGGAGAAAACACACGTCGTGACAACCCCTGGAAGTGGTTTCGGACCTGGCGGCGAAGGATTTGTGAGGGTAAGTGCTTTTGGTCACAGGGAGAATGTTGTGGAAGCCTGCAGAAGATTCAAGCAGCTATACAAGTGA 1386 45.38 MAATHSLSSAALSSSSSAFFAHSRFNAKNSSVSLPAKPAGVCKCVATSQDSTTAYKTAVSRNANMAKLQAGYLFPEIARRRNAHLLKYPDAKVISLGIGDTTEPIPEVITLAMAKRSHALSTLEGYSGYGAEQGEKSVRTLLGKTFYSDLGIEEDDIFVSDGAKCDITRLQLVFGSDVSMAVQDPSYPAYVDSSVILGQTGLYQKDIEKYGNIEYMRCTPENGFFPDLSKVPRTDIIFFCSPNNPTGSSATREQLTQLVQFAKKNGSIIVYDSAYAMYISDDNPKSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVVPKELLFSDGFPVAKDFNRIVCTCFNGASNIAQAGGLACLSPEGLEAMRGVIGFYKENTSIILDTFNSLGFNVYGGKNAPYAWVHFPGWSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENVVEACRRFKQLYK 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8675461 8681272 + Sed0028232.1 Sed07g1158 720022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1158 461 NCBIfam LL-diaminopimelate aminotransferase 60 458 IPR019942 GO:0008483(InterPro)
Sed07g1158 461 Gene3D - 103 360 IPR015421 -
Sed07g1158 461 Gene3D Aspartate Aminotransferase, domain 1 73 457 IPR015422 -
Sed07g1158 461 Pfam Aminotransferase class I and II 92 456 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Sed07g1158 461 SUPERFAMILY PLP-dependent transferases 72 456 IPR015424 -
Sed07g1158 461 Hamap LL-diaminopimelate aminotransferase [dapL]. 60 459 IPR019942 GO:0008483(InterPro)
Sed07g1158 461 PANTHER AMINOTRANSFERASE 1 461 IPR019942 GO:0008483(InterPro)|GO:0009089(PANTHER)|GO:0009507(PANTHER)|GO:0010285(PANTHER)
Sed07g1158 461 CDD AAT_like 94 458 - -
Sed07g1158 461 FunFam LL-diaminopimelate aminotransferase, chloroplastic 103 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1158 K10206 - - csv:101217452 831.632
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1158 Sed-Chr7:8675461 Sed11g2297 Sed-Chr11:36057275 3.30E-159 dispersed
Sed13g0404 Sed-Chr13:2661161 Sed07g1158 Sed-Chr7:8675461 1.60E-254 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g811 . Blo03g00048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed07g1158 . Cmo16g00312 . . . . . . Bhi11g01088 Tan01g0587 Cmetu07g0545 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006830 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 2 37