Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1161 ATGGCCACCGGCGTGCTGCTCCGTTCTCTCCGACGTCGCGATTTAGGTTCCTCCTCCATTGCAGCTTACCGATCCTTAACAAGCAATGCCAAGCCATCATGGGCAAGTTTGTCCAGGCCATTCAGTGCAAAGCCTGCTGGGAATGATGTGATTGGTATTGACTTGGGTACCACCAATTCTTGTGTTTCTGTAATGGAAGGGAAGAATCCAAAAGTTATTGAAAACTCTGAAGGTGCTAGGACCACACCGTCGGTGGTTGCTTTCAATCAGAAAGGTGAACTACTCGTTGGAACACCAGCAAAGAGACAGGCAGTAACAAATCCAACTAATACTGTGTTTGGAACCAAACGTTTGATTGGTAGACGCTTTGATGATCCTCAGACACAGAAGGAAATGAAGATGGTACCATACAAAATAGTCAGAGCCCCAAATGGAGATGCTTGGGTTGAAGCAAATGGTCAGCATTACTCACCGAGTCAGATTGGTGCTTTTGTTCTAACAAAGATGAAGGAAACTGCTGAAGCCTATCTTGGGAAGGGTGTGTCCAAAGCTGTGATTACTGTTCCAGCTTATTTCAACGATGCACAGAGGCAGGCAACAAAGGATGCTGGCAAGATTGCTGGTTTGGATGTTCTTAGAATTATCAATGAGCCCACTGCTGCTGCACTTTCTTATGGAATGAATAACAAGGAAGGTGTCATTGCAGTCTTTGATCTTGGTGGTGGCACGTTTGATGTTTCTATTTTGGAGATATCCAATGGTGTTTTTGAGGTGAAATCGACCAATGGTGACACATTCTTGGGAGGAGAGGATTTCGACAATGCTCTACTGGACTTCCTAGTTAGTGATTTCAAACAAACCGAGGGAATTGACCTTACCAAGGACAAGCTTGCCTTGCAGAGGCTTAGGGAAGCTGCGGAAAAGGCAAAGATTGAACTATCATCTACATCACAGACTGAAATTAACTTGCCATTTATCACTGCTGATGCATCTGGTGCAAAACATTTGAACATCACTTTGACCAGGTCAAAGTTTGAAAGCTTAGTTAATAATCTTATTGAAAGAACCAAGGCCCCATGCAAAAATTGTTTGAAGGATGCCTGTATTTCTATCAAAGAAGTGGATGAAGTGCTTTTGGTTGGTGGAATGACTCGTGTACCTAAGGTGCAAGAAGTTGTCACACAAATTTTTGGAAAGAGCCCCAGCAAAGGAGTGAATCCTGATGAAGCAGTTGCTATGGGAGCTGCTATTCAGGGCGGCATTCTTCGTGGCGATGTCAAAGAATTGCTTCTTTTAGATGTTACCCCACTATCGCTTGGTCTTGAAACACTTGGTGGTATCTTTACGAGGTTGATCAGTCGGAACACTACTATTCCAACTAAGAAGAGCCAGGTGTTCTCAACTGCAGCTGACAATCAGACCCAGGTTGGTATCAAGGTACTGCAAGGTGAGAGAGAAATGGCTTCTGACAACAAGCTTCTAGGGGAGTTTGAGTTGGTTGGAATTCCTCCCGCCCCGAGAGGAATGCCTCAAATTGAGGTGACATTTGACATTGATGCCAATGGCATTGTTACGGTCTCGGCCAAGGACAAGTCCACTGGTAAAGAGCAACAGATCACCATTCGATCTTCTGGAGGACTCTCCGATGACGAAATCGAGAAAATGGTCAAAGAAGCAGAGTTACACGCCCAGAAGGATCAAGAGAGGAAATCTCTTATTGACATACGAAACAGCGCAGACACCACCATCTACAGCATCGAGAAGAGCTTGGGTGAATACAGGGAGAAAATACCTAGCGAGGTCGCCAAAGAAATCGAGGATGCAGTGGCAGACTTGAGGAAGGCAATGACAGAAGAGGACATTGAAGAGATTAAGTCAAAACTCGACGCTGCCAACAAAGCTGTTTCAAAGATTGGCCAGCATATGTCTGGTGGTGGTTCAGGTGAAGCTTCTGGAGGATCTCAGGGTGGTGAACAAGCTCCTGAGGCTGAGTACGAAGAGGCGAAGAAATAA 2013 45.21 MATGVLLRSLRRRDLGSSSIAAYRSLTSNAKPSWASLSRPFSAKPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVRAPNGDAWVEANGQHYSPSQIGAFVLTKMKETAEAYLGKGVSKAVITVPAYFNDAQRQATKDAGKIAGLDVLRIINEPTAAALSYGMNNKEGVIAVFDLGGGTFDVSILEISNGVFEVKSTNGDTFLGGEDFDNALLDFLVSDFKQTEGIDLTKDKLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFESLVNNLIERTKAPCKNCLKDACISIKEVDEVLLVGGMTRVPKVQEVVTQIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGLETLGGIFTRLISRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKLLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSDDEIEKMVKEAELHAQKDQERKSLIDIRNSADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMTEEDIEEIKSKLDAANKAVSKIGQHMSGGGSGEASGGSQGGEQAPEAEYEEAKK 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8695297 8701007 - Sed0014122.1 Sed07g1161 720025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1161 670 Gene3D - 51 419 - -
Sed07g1161 670 Hamap Chaperone protein DnaK [dnaK]. 47 668 IPR012725 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Sed07g1161 670 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 422 546 IPR029047 -
Sed07g1161 670 SUPERFAMILY Actin-like ATPase domain 231 422 IPR043129 -
Sed07g1161 670 FunFam Heat shock protein 9 113 164 - -
Sed07g1161 670 FunFam Molecular chaperone DnaK 51 233 - -
Sed07g1161 670 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 424 580 IPR029047 -
Sed07g1161 670 FunFam Molecular chaperone DnaK 547 646 - -
Sed07g1161 670 FunFam Molecular chaperone DnaK 269 356 - -
Sed07g1161 670 ProSitePatterns Heat shock hsp70 proteins family signature 1. 53 60 IPR018181 -
Sed07g1161 670 FunFam Chaperone protein DnaK HSP70 418 601 - -
Sed07g1161 670 FunFam Chaperone protein HscA homolog 234 290 - -
Sed07g1161 670 SUPERFAMILY Actin-like ATPase domain 50 230 IPR043129 -
Sed07g1161 670 ProSitePatterns Heat shock hsp70 proteins family signature 3. 377 391 IPR018181 -
Sed07g1161 670 PRINTS 70kDa heat shock protein signature 374 390 - -
Sed07g1161 670 PRINTS 70kDa heat shock protein signature 49 62 - -
Sed07g1161 670 PRINTS 70kDa heat shock protein signature 100 108 - -
Sed07g1161 670 PRINTS 70kDa heat shock protein signature 77 89 - -
Sed07g1161 670 PRINTS 70kDa heat shock protein signature 242 252 - -
Sed07g1161 670 PRINTS 70kDa heat shock protein signature 405 425 - -
Sed07g1161 670 PRINTS 70kDa heat shock protein signature 184 204 - -
Sed07g1161 670 PRINTS 70kDa heat shock protein signature 428 447 - -
Sed07g1161 670 PRINTS 70kDa heat shock protein signature 509 525 - -
Sed07g1161 670 PANTHER HEAT SHOCK PROTEIN 70KDA 50 605 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0140662(InterPro)
Sed07g1161 670 Gene3D - 547 644 IPR029048 -
Sed07g1161 670 Pfam Hsp70 protein 50 642 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Sed07g1161 670 Gene3D - 226 406 - -
Sed07g1161 670 NCBIfam molecular chaperone DnaK 50 642 IPR012725 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Sed07g1161 670 Coils Coil 292 319 - -
Sed07g1161 670 CDD HSPA9-like_NBD 47 422 - -
Sed07g1161 670 Coils Coil 602 634 - -
Sed07g1161 670 ProSitePatterns Heat shock hsp70 proteins family signature 2. 236 249 IPR018181 -
Sed07g1161 670 Gene3D Actin; Chain A, domain 4 269 356 - -
Sed07g1161 670 MobiDBLite consensus disorder prediction 635 670 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1161 Sed-Chr7:8695297 Sed12g2279 Sed-Chr12:33009967 1.30E-153 dispersed
Sed11g1706 Sed-Chr11:32258718 Sed07g1161 Sed-Chr7:8695297 1.10E-187 transposed
Sed13g0392 Sed-Chr13:2609474 Sed07g1161 Sed-Chr7:8695297 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1161 K04043 - csv:101216102 1196.42