Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1166 ATGGGAAGAGGGAAAATTGTGATTCAAAGGATTGATAATTCAACAAGGAGGCAAGTGACTTTTTCAAAGAGAAGAAGTGGATTGCTGAAGAAAGCTAGAGAGCTTTCAGTTCTTTGTGATGCAGAAATTGGATTGATCATTTTTTCAAACACTGGCAAACTCTATGATTATTCCACCACCAGCATAAATTCAATTACGGATCGCTATAATAAGATGAAAGCGGAGCAAAATCAGCTGATGAACTCTGCTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCGGCATTGAAGCAACAACTTCATTACTTGCAGGAATGTCACAGACAATTGATGGGTGAAGAACTATCTGGCCTGAGTGTCAAACATCTACAAGATCTGGAATGTCAGTTAGAAATCAGTTTGAAAGGAGTCCGTGTGAAAAAGGAAAATATTCTAAGTGATAAAATTACTGAACTGAGACAGAAGGTTTCCCCCATTTTACCTCATTATATCAGATAA 498 37.95 MGRGKIVIQRIDNSTRRQVTFSKRRSGLLKKARELSVLCDAEIGLIIFSNTGKLYDYSTTSINSITDRYNKMKAEQNQLMNSASELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKHLQDLECQLEISLKGVRVKKENILSDKITELRQKVSPILPHYIR 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8713297 8722087 - Sed0015557.4 Sed07g1166 720030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1166 165 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1166 165 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1166 165 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1166 165 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Sed07g1166 165 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1166 165 ProSiteProfiles K-box domain profile. 86 165 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed07g1166 165 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1166 165 Pfam K-box region 82 156 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed07g1166 165 Gene3D - 13 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1166 165 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 155 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed07g1166 165 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed07g1166 165 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1166 165 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1166 165 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1166 165 Coils Coil 72 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1166 Sed-Chr7:8713297 Sed07g1168 Sed-Chr7:8713297 8.30E-81 dispersed
Sed07g1165 Sed-Chr7:8713297 Sed07g1166 Sed-Chr7:8713297 5.10E-80 tandem
Sed07g1166 Sed-Chr7:8713297 Sed07g1167 Sed-Chr7:8713297 3.50E-87 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39058 PF01486 K-box 2.30E-22 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1166 K09264 - csv:101203098 270.781