Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1176 ATGACAAGGCAAAAAATAGAGATAAAGAAAATAGACAACATAGCAGCAAGGCAAGTGACATTTTCAAAGAGAAGAAGAGGGCTATTCAAAAAAGCTCATGAACTCTCAACTCTTTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTATTTGACTATTCTTCCTCAAGCATGCAGGAGCTGTTGAGAAGACATAACATGCTACCAGGGCTAATTAATAACTTTGGCCAACCTCCATTACAGCTTGAAAAGGGTGCCCATGCTAAACTGACTGAGGAATTTGCAGCCAAAACCAAAGAAATTAGGCATATGAAGGGAGAAGAGCTCCAAGGATTGGGAATAGAAGAATTAAAGCAGCTGGAGAAATTGCTTGAAATTGGCTTGAATCGTGTAATTGAGACAAAGGATGAAAAGTTTCTTAAAGAGATTGGTGCTGGAAAAGAGAAGGAAGCATTGTTGATGAAAGAGAATCAGAGATTAAGGAATCAAGTGAGAGAGAGAGCTTGA 519 38.73 MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELSTLCDADIALIVFSASGKLFDYSSSSMQELLRRHNMLPGLINNFGQPPLQLEKGAHAKLTEEFAAKTKEIRHMKGEELQGLGIEELKQLEKLLEIGLNRVIETKDEKFLKEIGAGKEKEALLMKENQRLRNQVRERA 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8780440 8791971 - Sed0022681.2 Sed07g1176 720040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1176 172 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1176 172 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1176 172 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1176 172 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1176 172 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1176 172 Pfam K-box region 91 168 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed07g1176 172 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1176 172 ProSiteProfiles K-box domain profile. 84 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed07g1176 172 FunFam Transcription factor, MADS-box 13 83 - -
Sed07g1176 172 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1176 172 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed07g1176 172 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed07g1176 172 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 167 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed07g1176 172 Gene3D - 15 73 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1176 Sed-Chr7:8780440 Sed13g0370 Sed-Chr13:2468492 3.20E-75 dispersed
Sed07g1175 Sed-Chr7:8780440 Sed07g1176 Sed-Chr7:8780440 1.10E-85 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39062 PF01486 K-box 9.40E-15 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1176 - - - 0.0