Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1188 ATGGCGAACATCGACCTCGAATCGCAGGAAAATAAGCCGTTTCTGGGGAACCCACCTCCCAAACAGGGCGCTAAACCGATCCCATTTCTGATTTCGATCGCCATTGGCCTCATTGTTCGCTTTGCCGTTCCCAAACCGGCGCATGTTTCGGCCCAAGCGTGGCAGTTGCTGTCGATTTTCCTGTCCACCATTGCCGGCCTCGTGTTGGGTCCTTTGCCGGTGGGTGCTTGGGCGTTTCTCGGCCTGACGATGGCCGTGGTTTCCAAGACCTTGACGTTCGCGGCTGCGTTTACAGCGTTTACCAGTGAGGTGATTTGGTTGATTGTTATTTCTTTCTTTTTCGCTCGTGGGTTTGTGAAAACTGGGTTGGGGGATCGAATTGCGACGTATTTTGTGAAGTGGATGGGGAAGAGTACGCTTGGGTTGTCTTATGGGTTGACGATTAGTGAGGCTTTGATTGCTCCTGCTATGCCTAGCACCACGGCTAGGGCTGGGGGTGTGTTTTTGCCCATTATTAAGTCTTTGTCCATGGCTGCTGATAGTAGACCTAAAGACCCTTCTTCTAGGAAGATTGGTGCTTATCTTGTTCAGTCTCAGTTTCAGTGTGCTGGCAACTCTAGTGCCCTTTTCCTAACTGCCGCTGCTCAAAACTTGCTGTGCCTTCAATTGGCTGAAGCACTTGGTGTGAAAATAGCTAACCCCTGGATTACCTGGGCCAAGTGTGCTTGTGTGCCAGCAATCGTCGGCCTCGTAGCTACTCCAGCAATCTTATACAAGTTGTTTCCTCCGGAAACCAAAAACACGCCGGAAGCCCCAGCCATGGCTACAAGAAAATTGGAGGCTTTGGGTCCCGTCACGAAAAATGAATGGATCATGGTCGCTACCATGCTTGTTGCAGTCTCTTTATGGATTGCTGGAGATAAAATTGGAATTTCTAGTGTTGTATCTGCAATGATTGGTTTATCTATACTACTTACTCTGGGTGTCCTAGACTGGGATGATTGCTTAGCCGAAAAGTCGGCCTGGGATACGTTAGCATGGTTCGCTGTCCTTGTGGGCATGGCAAGCCAATTGACAACGCTTGGTCTCGTCAGTTGGATGTCGGATTCTGTAGCCCATTTGCTGAACTCTCTCTCACTCAGCTGGCCTGGAGCATTTGGTATTCTTCAGGCAACTTACTTCTTAGTACACTACCTCTTCGCTAGCCAAACTGGTCACGTTGGAGCTTTGTACTCGGCGTTCCTCGCAATGCTCTTGGCCGCCAAGGTGCCCGGTTTGTTGGCTGCACTGGCCTTGGCTTACAACACGAATCTCTTCGGCGCTCTGACTCATTACAGCAGTGGCCAAGCTGCTGTATACTATGGAGCGGGCTATGTCGAGCTAGTGGACGTGTTCAAAATCGGTATCGTGATGGCCCTCGTGAATGGTATTATTTGGACTGTGGTTGGAGGCATTTGGTGGAAGATTCTGGGTCTATATTGA 1482 50.07 MANIDLESQENKPFLGNPPPKQGAKPIPFLISIAIGLIVRFAVPKPAHVSAQAWQLLSIFLSTIAGLVLGPLPVGAWAFLGLTMAVVSKTLTFAAAFTAFTSEVIWLIVISFFFARGFVKTGLGDRIATYFVKWMGKSTLGLSYGLTISEALIAPAMPSTTARAGGVFLPIIKSLSMAADSRPKDPSSRKIGAYLVQSQFQCAGNSSALFLTAAAQNLLCLQLAEALGVKIANPWITWAKCACVPAIVGLVATPAILYKLFPPETKNTPEAPAMATRKLEALGPVTKNEWIMVATMLVAVSLWIAGDKIGISSVVSAMIGLSILLTLGVLDWDDCLAEKSAWDTLAWFAVLVGMASQLTTLGLVSWMSDSVAHLLNSLSLSWPGAFGILQATYFLVHYLFASQTGHVGALYSAFLAMLLAAKVPGLLAALALAYNTNLFGALTHYSSGQAAVYYGAGYVELVDVFKIGIVMALVNGIIWTVVGGIWWKILGLY 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8889269 8893692 + Sed0023554.1 Sed07g1188 720052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1188 493 NCBIfam DASS family sodium-coupled anion symporter 44 487 IPR001898 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed07g1188 493 PANTHER DICARBOXYLATE TRANSPORTER 2.1, CHLOROPLASTIC 17 493 IPR030676 GO:0005215(PANTHER)
Sed07g1188 493 PIRSF DASS 17 493 IPR030676 -
Sed07g1188 493 MobiDBLite consensus disorder prediction 1 20 - -
Sed07g1188 493 Pfam Sodium:sulfate symporter transmembrane region 29 492 IPR001898 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3295 Sed-Chr1:61257053 Sed07g1188 Sed-Chr7:8889269 1.10E-116 dispersed
Sed13g0354 Sed-Chr13:2378489 Sed07g1188 Sed-Chr7:8889269 3.90E-226 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1188 - - - 0.0