Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1193 ATGGATAACTTATGCTGTTTCAATTCTGTTTACTCTCAGTTTGTAGGAGGACGTTCGTCATGTAGCTCCGGAAAGGGCAGGGGCAATCAATGCCCTGCTAGGTATGGCTTTAGCCTAGTAAAAGGCAAAGCAAATCATCCAATGGAAGATTATCATGTTGCCGAATTTATTACAGTACAAGGCTGGGAACTCGGCCTTTTTGCTATATATGATGGACACCTAGGAGACAGCGTACCGGCCTATCTACAGAAGCATCTATTTTCCAATATACTGAAGGATGAGGATTTCTGGTCAAATCCCCGAAGCTCTATCTTTAAGGCGTACGAGAAGACAGACCAAGCAATACTCTCACACAATCCTGACTTGGGAAGAGGTGGATCCACGGCTGTCACTGCAATTTTAATAAACGGTCAAAAGTTATGGGTGGGTAATGTTGGAGATTCACGGGCAGTTCTTTCAAAAAGAGGGAAGGAAGAACAAATGTCTGTCGATCACGAACCAAACACGGAGCGAGGAAGTATCGAGGACAGAGGTGGCTTTGTCTCTAACATGCCAGGAGATGTTGCTAGAGTGAACGGGCAACTTGCAGTTTCTCGAGCATTTGGCGACAAAAACCTCAAAACACACTTGCGATGTGATCCCGACATAAAGAATGTCGATATTGACTCTGACACTGAGCTTCTTGTCTTGGCAAGTGATGGTCTATGGAAGGTCATGACAAATCAAGAAGCTGTGGATATAGCTAGAAGGACCAAAGATCCCCAGAGGGCAGCAAAGCAATTAGCAGCAGAAGCATTGAAAAGGGAAAGCAAAGACGACATCTCGATCATCGTAGTTCGTTTCAAAGGGTGA 852 44.84 MDNLCCFNSVYSQFVGGRSSCSSGKGRGNQCPARYGFSLVKGKANHPMEDYHVAEFITVQGWELGLFAIYDGHLGDSVPAYLQKHLFSNILKDEDFWSNPRSSIFKAYEKTDQAILSHNPDLGRGGSTAVTAILINGQKLWVGNVGDSRAVLSKRGKEEQMSVDHEPNTERGSIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRCDPDIKNVDIDSDTELLVLASDGLWKVMTNQEAVDIARRTKDPQRAAKQLAAEALKRESKDDISIIVVRFKG 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8923313 8928379 - Sed0023082.1 Sed07g1193 720057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1193 283 Pfam Protein phosphatase 2C 44 274 IPR001932 -
Sed07g1193 283 MobiDBLite consensus disorder prediction 155 177 - -
Sed07g1193 283 FunFam Probable protein phosphatase 2C 39 26 282 - -
Sed07g1193 283 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Sed07g1193 283 SUPERFAMILY PP2C-like 31 282 IPR036457 -
Sed07g1193 283 PANTHER PROTEIN PHOSPHATASE 28 279 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed07g1193 283 MobiDBLite consensus disorder prediction 155 173 - -
Sed07g1193 283 SMART PP2C_4 30 279 IPR001932 -
Sed07g1193 283 SMART PP2C_SIG_2 45 281 IPR001932 -
Sed07g1193 283 CDD PP2Cc 34 281 IPR001932 -
Sed07g1193 283 Gene3D - 30 283 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2559 Sed-Chr5:37472780 Sed07g1193 Sed-Chr7:8923313 1.40E-71 dispersed
Sed05g2560 Sed-Chr5:37472780 Sed07g1193 Sed-Chr7:8923313 5.30E-71 dispersed
Sed07g1193 Sed-Chr7:8923313 Sed13g0343 Sed-Chr13:2310373 5.50E-141 dispersed
Sed07g1192 Sed-Chr7:8918298 Sed07g1193 Sed-Chr7:8923313 1.50E-46 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1193 K17506 - csv:101214223 528.865