Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1206 ATGTCGGCAATGTTGGGTGCTTTGTCTTCTCTGTGGATCATTTTGGTGCTTGGGTTTGTTTCGCTGCTCTATGCTAATCCTGAAGGTGATGCATTGAATGCCTTGAAGTCAAATTTAGAAGATCCCAACGGCGTACTGCAGAGTTGGGATCCTACACTTGTTAACCCCTGCACTTGGTTTCATGTCACCTGTGACAGTGAGAGAGTCACTCGAGTCGACCTTGGCAATGCAAATCTATCAGGCACTTTAGTTCCACAACTTGGTCAGCTTCTGAGTTTGCAATATTTGGAGCTTTATAGTAACAACATTAGTGGAGGAATTCCAGAGGAGCTTGGGGAGTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCACATACCCGTCACACTTGGCCAGCTTGAAAAACTTCGTTTCCTGCGTCTTAACAACAACAGCTTATCGGGAACTATTCCTATGTCATTAACTAAAGTTAAATCCTTGCAAGTCCTGGATCTTTCATTCAATCACCTAACTGGATATATTCCGGTCAATGGTTCTTTTTCCCTTTTTACCCCTATCAGTTTTGCCAACAATCTGTTAAAGGAATCTGCTGTATATACTCCACCATCTCCTTTACCTCCATCACCGACCCCCATATCAGGTAATAATGCCACTGGAGCTATTGCTGGAGGAGTTGCTGCTGCTGCCATTTTACTGTTTGCTGTTCCTGCTGTTGCGGTTGCTCTGTGGCGTCGGAAGAAACCACAAGATCACTTCTTTGATGTACCTGCCGAAGAGGATCCCGAAGTTCATCTTGGTCAGCTCAAGAGGTTCTCTCTACGTGAACTACAAGTTGCAACGGATCATTTTAGCAACAAACAGGTTCTAGGTAGAGGTGGTTTTGGCAAGGTCTATAAGGGACGGCTGGCTGATGGATCTCTAGTGGCAGTGAAAAGACTTAAAGAAGAACGTTCCCAAGGCGGGGAACTGCAATTTCAAACAGAAGTAGAGTTGATCAGCATGGCCGTGCATCGTAATCTGCTCCGCCTGCGTGGTTTTTGTATGACACCAACCGAGAGGTTGCTGGTCTATCCATTCATGGCTAATGGAAGTGTAGCATCGTGTTTAAGAGAACGTCAAGAATTACAGCCTCCACTTAATTGGACGAATCGAAAACACATTGCTTTGGGAGCGGCGAGGGGGCTTGCTTATCTACACGATCATTGCGATCCTAAGATTATTCATCGTGATGTGAAAGCTGCGAACATTTTGCTTGACGAGGAGTTTGAAGCTGTTGTTGGTGATTTTGGGCTGGCTAAACTCATGGACTACAAAGATACTCATGTTACAACTGCAGTACGAGGAACAATTGGGCATATAGCGCCTGAATACCTTTCGACTGGAAAATCTTCTGAAAAGACAGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTCATAACTGGACAGAGGGCCTTCGATCTTGCCCGGCTTGCAAATGACGACGATGTCATGCTTCTTGATTGGGTGAAAGGACTACTGAAAGACAAGAGGTTGGAAGCATTAGTTGATGCCGATCTTGCGGGAAACTATCCCAATGATGAAGTCGAGCAGCTTATACAAGTTGCCTTACTGTGCACACAAGGTACTCCTACGGAGCGGCCTAAGATGTCGGAGGTTGTACGGATGCTTGAGGGTGATGGTTTAGCCGAAAGATGGGACGAATGGCAGAAAGAGGAGCGATTCAATCAAGAAGTAAGCCGCAATCTCCCCGCACGTACTACTTGGATTCTTGACTCTACTGCTGAAATGCCTCCTGATGAACTGTCTGGTCCAAGATGA 1836 45.48 MSAMLGALSSLWIILVLGFVSLLYANPEGDALNALKSNLEDPNGVLQSWDPTLVNPCTWFHVTCDSERVTRVDLGNANLSGTLVPQLGQLLSLQYLELYSNNISGGIPEELGELTNLVSLDLYLNNLTGHIPVTLGQLEKLRFLRLNNNSLSGTIPMSLTKVKSLQVLDLSFNHLTGYIPVNGSFSLFTPISFANNLLKESAVYTPPSPLPPSPTPISGNNATGAIAGGVAAAAILLFAVPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKQVLGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVELISMAVHRNLLRLRGFCMTPTERLLVYPFMANGSVASCLRERQELQPPLNWTNRKHIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLEALVDADLAGNYPNDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWDEWQKEERFNQEVSRNLPARTTWILDSTAEMPPDELSGPR 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9009788 9020243 - Sed0026817.1 Sed07g1206 720070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1206 611 SUPERFAMILY L domain-like 27 201 - -
Sed07g1206 611 Gene3D Ribonuclease Inhibitor 25 204 IPR032675 -
Sed07g1206 611 Gene3D Phosphorylase Kinase; domain 1 257 364 - -
Sed07g1206 611 ProSiteProfiles Protein kinase domain profile. 288 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1206 611 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524(InterPro)
Sed07g1206 611 FunFam Somatic embryogenesis receptor kinase 1 257 364 - -
Sed07g1206 611 SMART serkin_6 288 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1206 611 SUPERFAMILY Protein kinase-like (PK-like) 267 563 IPR011009 -
Sed07g1206 611 FunFam Somatic embryogenesis receptor-like kinase 1 365 582 - -
Sed07g1206 611 Gene3D Transferase(Phosphotransferase) domain 1 365 582 - -
Sed07g1206 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1206 611 Pfam Protein tyrosine and serine/threonine kinase 291 562 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1206 611 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Sed07g1206 611 FunFam Somatic embryogenesis receptor kinase 1 24 210 - -
Sed07g1206 611 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 610 - -
Sed07g1206 611 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515(InterPro)
Sed07g1206 611 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515(InterPro)
Sed07g1206 611 Pfam Leucine Rich Repeat 164 180 IPR001611 GO:0005515(InterPro)
Sed07g1206 611 Pfam Leucine Rich Repeat 140 160 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1206 Sed-Chr7:9009788 Sed13g0325 Sed-Chr13:2212165 3.30E-215 dispersed
Sed13g0324 Sed-Chr13:2200440 Sed07g1206 Sed-Chr7:9009788 8.80E-253 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79456 PF00069 Pkinase 6.80E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1206 K13416 - csv:101216389 1030.01