Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1207 ATGATGAAGCTGCAAACATATGCGGGAATTAGTTTCATTGCATTCATAGTGGTTATCTATCACGCTTTCAACAGTAGAGGCCAATTCTACCCAGCATTGGTTTATTTATCAACTTCCAAGATCAACTTAGTGCTTCTTCTCAATATGGGATTAGTCATCATGTGCATTTTGTGGCAGCTAACCAAAAAAATATTTCTTGGTTCTCTCCGGGAAGCAGAGGTTGAGAGGCTCAATGAGCAATCGTGGAAGGAGCTGATGGAAATTCTCTTTGCCATCACTATTTTCCGGCAAGATTTTTCCATTGCATTTCTTAGTATGGTTACGGCTCTATTGTTGATCAAAGCTTTGCATTGGTTGGCACAGAAGAGGGTTGAATACATGGAAACCACTCCATCAGTGCCGTTATTGTCTCATATCCGAATCGTTTCTTTCTTGGGTTTTCTCTTTGTTCTAGATAGTCTGCTTTTTTATAATTCGCTTGAGTCTCTGTTACGGATAAGGAAGGCTTCAGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCGACAACGTCTGTGTCAACATTTGTGAAATATATTTTCTACGTCAGTGACACACTCATGGAGGGACAATGGGAAAAGAAACCTGTCTATACATTCTACTTAGAACTTATCCGAGACTTACTTCACTTGTCGATGTACTTATGTTTCTTTCTTGTGATTTTCATGACTTATGGCGTGCCTTTGCACTTGATCCGAGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGTATTGCAGATTACGTCCGTTATAGAAAGATTACTTCAAACATGAATGATCGTTTTCCAGATGCAACACCTGAAGAACTCAATTCAAGTGATGCTACATGCATTATTTGTCGTGAAGAGATGACAGTTGCGAAGAAACTAGTATGTGGACATCTTTTTCATGTCCATTGCCTCCGGTCCTGGTTGGAGCGACAACATACTTGTCCCACTTGCAGAGCCCTTGTTGTACCACCTGAAGGTTCAAGCACAGCAGGAGGCCATCAGGGATTGCAGTCTGATGCTAACCAACAAGGAACAACAGATTCATCCGCACAAGGTTCGAGTGGTACAACTGCCGGTGGTGGCGATAATTTGAGTCATCAACAGGCTAGAGCCCAAGCTGCTGCCGCTGCTGCTTCAATATACGAGAAATCTTATGTTTATCCTTTTGCGAACACATTAGTATGGTCTCCTGGATATGCAGTAGTTCCTCAGGTTCAAAGACCTTTGCCTGACTTCAACAATGTTGTACCGAATGGAGAACAAGGACAATATTTTCCATTTACAGGCGGCCCTGCAAACCTGTCTTTCACTCAAATTCCCCAAAATCTTTTTGTTCCTTTTCAGCCACGAGAGGGCACCGTAAACAGTACGAATGGATTGGGCAGTAGTCAATATATATCAGTCTCACAGCTTGAATCCCAAGAAAGATTTCTTCAACAACAGATTGAGATCCTACAAGATCAGCTGCAACTTCTCGGTAAACTGAAAGTTGAGGAAACCCCAAGAGTGGGTGAGACAGATAAGAAAGGGAAAAACATAGCATCATCGTCACCGTCATCGTCGCCATCGATTTCAGATTCTCATCCACCTGGAGAAACTGAAAAAAGCTGGTGA 1650 41.88 MMKLQTYAGISFIAFIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSIAFLSMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLLFYNSLESLLRIRKASVSLFFSFEYMILATTSVSTFVKYIFYVSDTLMEGQWEKKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYVRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSTAGGHQGLQSDANQQGTTDSSAQGSSGTTAGGGDNLSHQQARAQAAAAAASIYEKSYVYPFANTLVWSPGYAVVPQVQRPLPDFNNVVPNGEQGQYFPFTGGPANLSFTQIPQNLFVPFQPREGTVNSTNGLGSSQYISVSQLESQERFLQQQIEILQDQLQLLGKLKVEETPRVGETDKKGKNIASSSPSSSPSISDSHPPGETEKSW 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9022763 9029349 - Sed0012852.1 Sed07g1207 720071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1207 549 CDD RING-H2_synoviolin 289 330 - -
Sed07g1207 549 MobiDBLite consensus disorder prediction 522 543 - -
Sed07g1207 549 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Sed07g1207 549 MobiDBLite consensus disorder prediction 509 549 - -
Sed07g1207 549 SMART ring_2 292 329 IPR001841 -
Sed07g1207 549 Pfam Ring finger domain 291 330 IPR001841 -
Sed07g1207 549 PANTHER RING ZINC FINGER PROTEIN 2 337 IPR050731 -
Sed07g1207 549 MobiDBLite consensus disorder prediction 342 379 - -
Sed07g1207 549 Coils Coil 480 500 - -
Sed07g1207 549 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Sed07g1207 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 336 IPR013083 -
Sed07g1207 549 SUPERFAMILY RING/U-box 272 336 - -
Sed07g1207 549 MobiDBLite consensus disorder prediction 340 379 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0518 Sed-Chr5:3575956 Sed07g1207 Sed-Chr7:9022763 2.00E-18 dispersed
Sed05g0519 Sed-Chr5:3575956 Sed07g1207 Sed-Chr7:9022763 1.90E-18 dispersed
Sed07g1207 Sed-Chr7:9022763 Sed07g1208 Sed-Chr7:9022763 1.80E-265 tandem
Sed13g0323 Sed-Chr13:2191609 Sed07g1207 Sed-Chr7:9022763 1.40E-257 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1207 K10601 - csv:101215351 877.856