Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1209 ATGGGCACCAGAACCCAGCAACAGTACCGCGAAGACGACGACGGCGACCTCCCAGGTGGCCCCGCCGCCACAATTTCCGGTCAGTCTGTTTCCATGAGTGGCAGTGTCGGTTCTCCGTCCAGCCGCAGTGAGCAGACCATGGCGACGCCAAGTGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCTGGGTCGCAAGGACCTACTCCTAACGTGAAGAAAAAGAGGGGACAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTCAGCATGAAAGTTTGTGAGAAAGTGGAGAGTAAGGGAAGAACGACCTACAACGAGGTTGCAGATGAACTTGTCACAGAGTTTTCTGATCCTGGCAATAGTCTTGCATCTCCGGATCAGCAACAGTACGATGAGAAAAATATCAGGCGAAGGGTATATGATGCCCTGAATGTTCTCATGGCAATGGATATCATATCAAAAGATAAGAAAGAGATACAATGGAAGGGTCTGCCACGTACCAGCGTGAATGATATCGAAGAACTAAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAGAAGAAAGCAGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGCCTTCAGAACCTAATACAGCGAAATGAACAGTTATTCAGTTCTGAGAACGCTCCCAGTGGTGGCGTGTCTTTACCTTTCATCCTGGTGCAGACACGGCCCCATGCAACTGTTGAGATAGAAATTTCAGAAGATATGCAGTTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTTCATGATGACAATTACGTTTTGAAGGCAATGAAATTTTGCAACAGACCGCAATGCGATAATACTGCACAGAATTTTACTCCTGATGCCGGGGAGGGTTCGAGCATGTCAGGCATGTATCAACAACCCCAGATCGCTCTTCCTTCAATGTCTAACACGCCCCTTAGAACTCCAACCTCGCCCCCACTTCCCGGAATTATAAAAGCTCGTGTCAAACACGAACATTAA 1038 48.27 MGTRTQQQYREDDDGDLPGGPAATISGQSVSMSGSVGSPSSRSEQTMATPSDNTFLRLNNLDIHGDEAGSQGPTPNVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVTEFSDPGNSLASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCNRPQCDNTAQNFTPDAGEGSSMSGMYQQPQIALPSMSNTPLRTPTSPPLPGIIKARVKHEH 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9031077 9036516 + Sed0023610.1 Sed07g1209 720073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1209 345 MobiDBLite consensus disorder prediction 24 58 - -
Sed07g1209 345 Coils Coil 189 223 - -
Sed07g1209 345 SUPERFAMILY E2F-DP heterodimerization region 180 299 IPR037241 -
Sed07g1209 345 Gene3D - 86 178 IPR036388 -
Sed07g1209 345 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed07g1209 345 MobiDBLite consensus disorder prediction 1 93 - -
Sed07g1209 345 Gene3D Transcription factor DP 179 312 IPR038168 -
Sed07g1209 345 CDD DP_DD 178 281 IPR014889 -
Sed07g1209 345 Pfam Transcription factor DP 181 288 IPR014889 -
Sed07g1209 345 PIRSF Txn_factor_DP 3 345 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Sed07g1209 345 SUPERFAMILY Winged helix DNA-binding domain 93 174 IPR036390 -
Sed07g1209 345 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed07g1209 345 FunFam Transcription factor-like protein DPB 179 304 - -
Sed07g1209 345 PANTHER TRANSCRIPTION FACTOR DP 23 312 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Sed07g1209 345 FunFam Transcription factor-like protein DPB 85 178 - -
Sed07g1209 345 SMART DP_2 180 343 IPR014889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1209 K04683 - - csv:101216863 619.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1209 Sed-Chr7:9031077 Sed07g1210 Sed-Chr7:9031077 5.70E-132 tandem
Sed13g0318 Sed-Chr13:2168436 Sed07g1209 Sed-Chr7:9031077 2.20E-171 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g2542 . 3 374 E2F-DP Transcription Factor Family AT3G48160 54.4 4.2e-102 369.4
Sed01g1687 . 3 366 E2F-DP Transcription Factor Family AT3G48160 55.5 1.4e-100 364.4
Sed08g2541 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed08g2543 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed07g1209 . 79 282 E2F-DP Transcription Factor Family AT5G02470 54.6 3.2e-59 226.5
Sed13g0318 . 79 284 E2F-DP Transcription Factor Family AT5G02470 54.1 1.0e-57 221.5
Sed01g3208 . 17 429 E2F-DP Transcription Factor Family AT2G36010 54.8 6.8e-115 412.1
Sed14g0279 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0280 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0281 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed01g3208 . 9 422 E2F-DP Transcription Factor Family AT5G22220 56.5 3.7e-110 396.4
Sed03g1691 . 164 353 E2F-DP Transcription Factor Family AT5G22220 57.4 9.3e-53 205.7
Sed03g1691 . 160 417 E2F-DP Transcription Factor Family AT1G47870 54.3 7.4e-67 252.3
Sed07g1209 . 79 282 E2F-DP Transcription Factor Family AT5G02470 54.6 3.2e-59 226.5
Sed13g0318 . 79 284 E2F-DP Transcription Factor Family AT5G02470 54.1 1.0e-57 221.5
Sed01g3208 . 9 422 E2F-DP Transcription Factor Family AT5G22220 56.5 3.7e-110 396.4
Sed03g1691 . 164 353 E2F-DP Transcription Factor Family AT5G22220 57.4 9.3e-53 205.7
Sed01g3208 . 17 429 E2F-DP Transcription Factor Family AT2G36010 54.8 6.8e-115 412.1
Sed14g0279 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0280 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0281 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed03g1691 . 160 417 E2F-DP Transcription Factor Family AT1G47870 54.3 7.4e-67 252.3
Sed08g2542 . 3 374 E2F-DP Transcription Factor Family AT3G48160 54.4 4.2e-102 369.4
Sed01g1687 . 3 366 E2F-DP Transcription Factor Family AT3G48160 55.5 1.4e-100 364.4
Sed08g2541 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed08g2543 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39063 PF08781 DP 2.20E-41 No_clan Sed TF