Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1209 ATGGGCACCAGAACCCAGCAACAGTACCGCGAAGACGACGACGGCGACCTCCCAGGTGGCCCCGCCGCCACAATTTCCGGTCAGTCTGTTTCCATGAGTGGCAGTGTCGGTTCTCCGTCCAGCCGCAGTGAGCAGACCATGGCGACGCCAAGTGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCTGGGTCGCAAGGACCTACTCCTAACGTGAAGAAAAAGAGGGGACAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTCAGCATGAAAGTTTGTGAGAAAGTGGAGAGTAAGGGAAGAACGACCTACAACGAGGTTGCAGATGAACTTGTCACAGAGTTTTCTGATCCTGGCAATAGTCTTGCATCTCCGGATCAGCAACAGTACGATGAGAAAAATATCAGGCGAAGGGTATATGATGCCCTGAATGTTCTCATGGCAATGGATATCATATCAAAAGATAAGAAAGAGATACAATGGAAGGGTCTGCCACGTACCAGCGTGAATGATATCGAAGAACTAAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAGAAGAAAGCAGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGCCTTCAGAACCTAATACAGCGAAATGAACAGTTATTCAGTTCTGAGAACGCTCCCAGTGGTGGCGTGTCTTTACCTTTCATCCTGGTGCAGACACGGCCCCATGCAACTGTTGAGATAGAAATTTCAGAAGATATGCAGTTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTTCATGATGACAATTACGTTTTGAAGGCAATGAAATTTTGCAACAGACCGCAATGCGATAATACTGCACAGAATTTTACTCCTGATGCCGGGGAGGGTTCGAGCATGTCAGGCATGTATCAACAACCCCAGATCGCTCTTCCTTCAATGTCTAACACGCCCCTTAGAACTCCAACCTCGCCCCCACTTCCCGGAATTATAAAAGCTCGTGTCAAACACGAACATTAA 1038 48.27 MGTRTQQQYREDDDGDLPGGPAATISGQSVSMSGSVGSPSSRSEQTMATPSDNTFLRLNNLDIHGDEAGSQGPTPNVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVTEFSDPGNSLASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCNRPQCDNTAQNFTPDAGEGSSMSGMYQQPQIALPSMSNTPLRTPTSPPLPGIIKARVKHEH 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9031077 9036516 + Sed0023610.1 Sed07g1209 720073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1209 345 MobiDBLite consensus disorder prediction 24 58 - -
Sed07g1209 345 Coils Coil 189 223 - -
Sed07g1209 345 SUPERFAMILY E2F-DP heterodimerization region 180 299 IPR037241 -
Sed07g1209 345 Gene3D - 86 178 IPR036388 -
Sed07g1209 345 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed07g1209 345 MobiDBLite consensus disorder prediction 1 93 - -
Sed07g1209 345 Gene3D Transcription factor DP 179 312 IPR038168 -
Sed07g1209 345 CDD DP_DD 178 281 IPR014889 -
Sed07g1209 345 Pfam Transcription factor DP 181 288 IPR014889 -
Sed07g1209 345 PIRSF Txn_factor_DP 3 345 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Sed07g1209 345 SUPERFAMILY Winged helix DNA-binding domain 93 174 IPR036390 -
Sed07g1209 345 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed07g1209 345 FunFam Transcription factor-like protein DPB 179 304 - -
Sed07g1209 345 PANTHER TRANSCRIPTION FACTOR DP 23 312 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Sed07g1209 345 FunFam Transcription factor-like protein DPB 85 178 - -
Sed07g1209 345 SMART DP_2 180 343 IPR014889 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1209 Sed-Chr7:9031077 Sed07g1210 Sed-Chr7:9031077 5.70E-132 tandem
Sed13g0318 Sed-Chr13:2168436 Sed07g1209 Sed-Chr7:9031077 2.20E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39063 PF08781 DP 2.20E-41 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1209 K04683 - csv:101216863 619.772