Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1240 ATGTTTCAAGGAGTTGTTTTCAGCATGAATGACGTGTACGGCCACGATTTCACCGCCGTGTCTCCGCCGGAAATCACCCACAGCCCCACGGCGGCGTTCAGCTCCGACGAGTTTCGAATGTACGGTTTCAAGATCCAACGGTGTACAAGAGCCGGCCACCACGACTGGTTGAATTGTCCTTACGCCCACCGCGGCGAGAAGGCGAAACGCCGTGATCCACGGCGTTTCAACTATGCCTCCGTGGCCTGCCCGGCCTTTCGGTCGGGCAGCTGCCCAAAGGGTGTTTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGGACCGGTACCGAACCCGGGCGTGCAATGCCGGGAAGTTCTGCCGACGGAAGGTCTGTTTTTTTGCTCACTCACTAGAAGAGCTCCGACCTGAGGCCAACGTGAAGCTTCAATTCATCCCGAACCGGCCACCGCGTGCGATGCTGGCCGACGATGAAGATACCGAGCCGTCGGGAAATATTCCGGACAGTGGACCGGTAAATGAAGGGAGTTTTGAACCGGAGGAGTCAGATTTGAAGTTTCCGGATACTGAATGGATATCTGAATTGTTGCAGTAA 606 55.45 MFQGVVFSMNDVYGHDFTAVSPPEITHSPTAAFSSDEFRMYGFKIQRCTRAGHHDWLNCPYAHRGEKAKRRDPRRFNYASVACPAFRSGSCPKGVFCEFAHGVFEFWLHPDRYRTRACNAGKFCRRKVCFFAHSLEELRPEANVKLQFIPNRPPRAMLADDEDTEPSGNIPDSGPVNEGSFEPEESDLKFPDTEWISELLQ 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9231562 9232167 + Sed0019962.1 Sed07g1240 720104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1240 201 MobiDBLite consensus disorder prediction 155 188 - -
Sed07g1240 201 ProSiteProfiles Zinc finger C3H1-type profile. 77 104 IPR000571 GO:0046872(InterPro)
Sed07g1240 201 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 102 IPR000571 GO:0046872(InterPro)
Sed07g1240 201 Gene3D - 74 145 - -
Sed07g1240 201 PANTHER UNKEMPT FAMILY MEMBER 24 146 IPR045234 -
Sed07g1240 201 SMART c3hfinal6 77 103 IPR000571 GO:0046872(InterPro)
Sed07g1240 201 SMART c3hfinal6 112 135 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1240 Sed-Chr7:9231562 Sed12g1796 Sed-Chr12:29019216 8.40E-43 dispersed
Sed13g0275 Sed-Chr13:1917940 Sed07g1240 Sed-Chr7:9231562 1.40E-74 wgd
Sed13g1846 Sed-Chr13:23420974 Sed07g1240 Sed-Chr7:9231562 3.30E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39068 PF00642 zf-CCCH 4.60E-05 CL0537 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1240 - - - 0.0