Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g1240 | ATGTTTCAAGGAGTTGTTTTCAGCATGAATGACGTGTACGGCCACGATTTCACCGCCGTGTCTCCGCCGGAAATCACCCACAGCCCCACGGCGGCGTTCAGCTCCGACGAGTTTCGAATGTACGGTTTCAAGATCCAACGGTGTACAAGAGCCGGCCACCACGACTGGTTGAATTGTCCTTACGCCCACCGCGGCGAGAAGGCGAAACGCCGTGATCCACGGCGTTTCAACTATGCCTCCGTGGCCTGCCCGGCCTTTCGGTCGGGCAGCTGCCCAAAGGGTGTTTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGGACCGGTACCGAACCCGGGCGTGCAATGCCGGGAAGTTCTGCCGACGGAAGGTCTGTTTTTTTGCTCACTCACTAGAAGAGCTCCGACCTGAGGCCAACGTGAAGCTTCAATTCATCCCGAACCGGCCACCGCGTGCGATGCTGGCCGACGATGAAGATACCGAGCCGTCGGGAAATATTCCGGACAGTGGACCGGTAAATGAAGGGAGTTTTGAACCGGAGGAGTCAGATTTGAAGTTTCCGGATACTGAATGGATATCTGAATTGTTGCAGTAA | 606 | 55.45 | MFQGVVFSMNDVYGHDFTAVSPPEITHSPTAAFSSDEFRMYGFKIQRCTRAGHHDWLNCPYAHRGEKAKRRDPRRFNYASVACPAFRSGSCPKGVFCEFAHGVFEFWLHPDRYRTRACNAGKFCRRKVCFFAHSLEELRPEANVKLQFIPNRPPRAMLADDEDTEPSGNIPDSGPVNEGSFEPEESDLKFPDTEWISELLQ | 201 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 9231562 | 9232167 | + | Sed0019962.1 | Sed07g1240 | 720104 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g1240 | 201 | MobiDBLite | consensus disorder prediction | 155 | 188 | - | - | |
Sed07g1240 | 201 | ProSiteProfiles | Zinc finger C3H1-type profile. | 77 | 104 | IPR000571 | GO:0046872(InterPro) | |
Sed07g1240 | 201 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 81 | 102 | IPR000571 | GO:0046872(InterPro) | |
Sed07g1240 | 201 | Gene3D | - | 74 | 145 | - | - | |
Sed07g1240 | 201 | PANTHER | UNKEMPT FAMILY MEMBER | 24 | 146 | IPR045234 | - | |
Sed07g1240 | 201 | SMART | c3hfinal6 | 77 | 103 | IPR000571 | GO:0046872(InterPro) | |
Sed07g1240 | 201 | SMART | c3hfinal6 | 112 | 135 | IPR000571 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g1240 | Sed-Chr7:9231562 | Sed12g1796 | Sed-Chr12:29019216 | 8.40E-43 | dispersed | |
Sed13g0275 | Sed-Chr13:1917940 | Sed07g1240 | Sed-Chr7:9231562 | 1.40E-74 | wgd | |
Sed13g1846 | Sed-Chr13:23420974 | Sed07g1240 | Sed-Chr7:9231562 | 3.30E-37 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39068 | PF00642 | zf-CCCH | 4.60E-05 | CL0537 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g1240 | - | - | - | 0.0 |