Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed07g1256 | ATGGGTGCTCCGAAGCAGAAATGGACTAACCAAGAAGAAGCAGCCCTGAAGGCGGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTCAAGGATCCCGAATTCAGCAATGTACTCTTTCTTCGTTCAAATGTCGATCTCAAGGACAAGTGGAGAAACATGAGTGTCATGGCTCATGGCTGGGGATCCCGGGATAAGGCCAGGTTGGCACTTAAGAGATTGCATCCTTCTAAAAAAGATGAGAGTAATGGGGCTCAAAGCGAAGCTGTCCAAAGTGAAGAAGAATCGCCAGAAGCTAAATCTGTTTCCCTTTCCTCGGACATCAAGCAGATAGCGGGTCCAAAGCGAACAAATGTAAGGAAAGAAGAGGAAGATGAAGATGATGAAGGAGAAGAGGAGGAGGAGGAAGTGGAAGAAAAAATAGAGAGGGATGCAAGATATGATTGCCATAGGTGGGAAAGAAGGTTAGACAATCTTATAATTGAGGCAATTTCTACCTTGAGGGAACGTAGTGGCTCTATCAAGTCAAGCATTGCTTCATATATAGAGGATCAATACTGGGCCCCTCCAGACTTCAAGAGGCTGTTACAATCAAAATTGAAGTTCTTAACAGCTAGTGGTAGACTGGTCAAGGTTAAACGGAGATATAGGCTTCCTCCAACGGTGCCTTCATCAGAGAGAAGGGTCTCTATGCTATTGATGGACGACCACCATAGAGCTTCTATAAGAGATGACAGTGATGAATTTTGCACTCTTGCGAAAGCTCAAATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCAGCTGCGGCTTCTCGAGCAGTCGCAGAAGCCGAAGCAGCAATTGCAGAAGCTGAAGAGGCAGCACGGGAAGCCGAGGCAGCTGAAGCCGATGCCGAAGCAGCACAAACATTTGCAGAAGCCGCAATGAAGACACTGAAAGGAAGAAATCTCCCCAAGATGGTAAAACTGCAAACTATTTATACGGTTGAAAACTTGAAAATGCATTAG | 1032 | 46.03 | MGAPKQKWTNQEEAALKAGVVKHGAGKWRTILKDPEFSNVLFLRSNVDLKDKWRNMSVMAHGWGSRDKARLALKRLHPSKKDESNGAQSEAVQSEEESPEAKSVSLSSDIKQIAGPKRTNVRKEEEDEDDEGEEEEEEVEEKIERDARYDCHRWERRLDNLIIEAISTLRERSGSIKSSIASYIEDQYWAPPDFKRLLQSKLKFLTASGRLVKVKRRYRLPPTVPSSERRVSMLLMDDHHRASIRDDSDEFCTLAKAQIDLELAKMRTMTSQEAAAAASRAVAEAEAAIAEAEEAAREAEAAEADAEAAQTFAEAAMKTLKGRNLPKMVKLQTIYTVENLKMH | 343 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 9409707 | 9415019 | + | Sed0017248.1 | Sed07g1256 | 720120 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed07g1256 | 343 | Pfam | linker histone H1 and H5 family | 159 | 215 | IPR005818 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro) | |
| Sed07g1256 | 343 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 33 | IPR017930 | - | |
| Sed07g1256 | 343 | SMART | sant | 4 | 59 | IPR001005 | - | |
| Sed07g1256 | 343 | MobiDBLite | consensus disorder prediction | 126 | 141 | - | - | |
| Sed07g1256 | 343 | SMART | h15plus2 | 155 | 217 | IPR005818 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro) | |
| Sed07g1256 | 343 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 150 | 222 | IPR005818 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro) | |
| Sed07g1256 | 343 | CDD | SANT_TRF | 6 | 56 | - | - | |
| Sed07g1256 | 343 | MobiDBLite | consensus disorder prediction | 77 | 142 | - | - | |
| Sed07g1256 | 343 | PANTHER | SINGLE MYB HISTONE 4 | 1 | 326 | IPR044597 | GO:0003691(InterPro) | |
| Sed07g1256 | 343 | FunFam | Telomere repeat-binding factor 1 | 2 | 58 | - | - | |
| Sed07g1256 | 343 | Pfam | Myb-like DNA-binding domain | 5 | 56 | IPR001005 | - | |
| Sed07g1256 | 343 | SUPERFAMILY | Homeodomain-like | 2 | 63 | IPR009057 | - | |
| Sed07g1256 | 343 | Coils | Coil | 122 | 145 | - | - | |
| Sed07g1256 | 343 | Gene3D | - | 2 | 59 | - | - | |
| Sed07g1256 | 343 | ProSiteProfiles | Myb-like domain profile. | 5 | 57 | IPR001005 | - | |
| Sed07g1256 | 343 | MobiDBLite | consensus disorder prediction | 85 | 114 | - | - | |
| Sed07g1256 | 343 | FunFam | Telomere repeat-binding factor 1 | 8 | 86 | - | - | |
| Sed07g1256 | 343 | SUPERFAMILY | Winged helix DNA-binding domain | 157 | 229 | IPR036390 | - | |
| Sed07g1256 | 343 | Coils | Coil | 275 | 312 | - | - | |
| Sed07g1256 | 343 | Gene3D | - | 155 | 230 | IPR036388 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed07g1256 | Sed-Chr7:9409707 | Sed10g0741 | Sed-Chr10:5083604 | 9.20E-58 | dispersed | |
| Sed07g1256 | Sed-Chr7:9409707 | Sed07g1257 | Sed-Chr7:9409707 | 6.70E-157 | tandem | |
| Sed13g0429 | Sed-Chr13:2825700 | Sed07g1256 | Sed-Chr7:9409707 | 1.50E-113 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 39071 | PF00538 | Linker_histone | 2.50E-08 | CL0123 | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed07g1256 | K09422 | - | csv:101218411 | 427.557 |