Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1257 ATGGGTGCTCCGAAGCAGAAATGGACTAACCAAGAAGAAGCAGCCCTGAAGGCGGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTCAAGGATCCCGAATTCAGCAATGTACTCTTTCTTCGTTCAAATGTCGATCTCAAGGACAAGTGGAGAAACATGAGTGTCATGGCTCATGGCTGGGGATCCCGGGATAAGGCCAGGTTGGCACTTAAGAGATTGCATCCTTCTAAAAAAGATGAGAGTAATGGGGCTCAAAGCGAAGCTGTCCAAAGTGAAGAAGAATCGCCAGAAGCTAAATCTGTTTCCCTTTCCTCGGACATCAAGCAGATAGCGGGTCCAAAGCGAACAAATGTAAGGAAAGAAGAGGAAGATGAAGATGATGAAGGAGAAGAGGAGGAGGAGGAAGTGGAAGAAAAAATAGAGAGGGATGCAAGATATGATTGCCATAGGTGGGAAAGAAGGTTAGACAATCTTATAATTGAGGCAATTTCTACCTTGAGGGAACGTAGTGGCTCTATCAAGTCAAGCATTGCTTCATATATAGAGGATCAATACTGGGCCCCTCCAGACTTCAAGAGGCTGTTACAATCAAAATTGAAGTTCTTAACAGCTAGTGGTAGACTGGTCAAGGTTAAACGGAGATATAGGCTTCCTCCAACGGTGCCTTCATCAGAGAGAAGGGTCTCTATGCTATTGATGGACGACCACCATAGAGCTTCTATAAGAGATGACAGTGATGAATTTTGCACTCTTGCGAAAGCTCAAATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCAGCTGCGGCTTCTCGAGCAGTCGCAGAAGCCGAAGCAGCAATTGCAGAAGCTGAAGAGGCAGCACGGGAAGCCGAGGCAGCTGAAGCCGATGCCGAAGCAGCACAAACATTTGCAGAAGCCGCAATGAAGACACTGAAAGGAAGAAATCTCCCCAAGATGGTAAAACTGCAAACTATTTATACGGTTGAAAACTTGAAAATGCATTAG 1032 46.03 MGAPKQKWTNQEEAALKAGVVKHGAGKWRTILKDPEFSNVLFLRSNVDLKDKWRNMSVMAHGWGSRDKARLALKRLHPSKKDESNGAQSEAVQSEEESPEAKSVSLSSDIKQIAGPKRTNVRKEEEDEDDEGEEEEEEVEEKIERDARYDCHRWERRLDNLIIEAISTLRERSGSIKSSIASYIEDQYWAPPDFKRLLQSKLKFLTASGRLVKVKRRYRLPPTVPSSERRVSMLLMDDHHRASIRDDSDEFCTLAKAQIDLELAKMRTMTSQEAAAAASRAVAEAEAAIAEAEEAAREAEAAEADAEAAQTFAEAAMKTLKGRNLPKMVKLQTIYTVENLKMH 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9409707 9415019 + Sed0017248.2 Sed07g1257 720121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1257 343 Pfam linker histone H1 and H5 family 159 215 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed07g1257 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Sed07g1257 343 SMART sant 4 59 IPR001005 -
Sed07g1257 343 MobiDBLite consensus disorder prediction 126 141 - -
Sed07g1257 343 SMART h15plus2 155 217 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed07g1257 343 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 150 222 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed07g1257 343 CDD SANT_TRF 6 56 - -
Sed07g1257 343 MobiDBLite consensus disorder prediction 77 142 - -
Sed07g1257 343 PANTHER SINGLE MYB HISTONE 4 1 326 IPR044597 GO:0003691(InterPro)
Sed07g1257 343 FunFam Telomere repeat-binding factor 1 2 58 - -
Sed07g1257 343 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Sed07g1257 343 SUPERFAMILY Homeodomain-like 2 63 IPR009057 -
Sed07g1257 343 Coils Coil 122 145 - -
Sed07g1257 343 Gene3D - 2 59 - -
Sed07g1257 343 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Sed07g1257 343 MobiDBLite consensus disorder prediction 85 114 - -
Sed07g1257 343 FunFam Telomere repeat-binding factor 1 8 86 - -
Sed07g1257 343 SUPERFAMILY Winged helix DNA-binding domain 157 229 IPR036390 -
Sed07g1257 343 Coils Coil 275 312 - -
Sed07g1257 343 Gene3D - 155 230 IPR036388 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1257 Sed-Chr7:9409707 Sed13g0429 Sed-Chr13:2825700 2.20E-112 dispersed
Sed07g1256 Sed-Chr7:9409707 Sed07g1257 Sed-Chr7:9409707 6.70E-157 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39072 PF00538 Linker_histone 2.50E-08 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1257 K09422 - csv:101218411 427.557