Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1257 ATGGGTGCTCCGAAGCAGAAATGGACTAACCAAGAAGAAGCAGCCCTGAAGGCGGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTCAAGGATCCCGAATTCAGCAATGTACTCTTTCTTCGTTCAAATGTCGATCTCAAGGACAAGTGGAGAAACATGAGTGTCATGGCTCATGGCTGGGGATCCCGGGATAAGGCCAGGTTGGCACTTAAGAGATTGCATCCTTCTAAAAAAGATGAGAGTAATGGGGCTCAAAGCGAAGCTGTCCAAAGTGAAGAAGAATCGCCAGAAGCTAAATCTGTTTCCCTTTCCTCGGACATCAAGCAGATAGCGGGTCCAAAGCGAACAAATGTAAGGAAAGAAGAGGAAGATGAAGATGATGAAGGAGAAGAGGAGGAGGAGGAAGTGGAAGAAAAAATAGAGAGGGATGCAAGATATGATTGCCATAGGTGGGAAAGAAGGTTAGACAATCTTATAATTGAGGCAATTTCTACCTTGAGGGAACGTAGTGGCTCTATCAAGTCAAGCATTGCTTCATATATAGAGGATCAATACTGGGCCCCTCCAGACTTCAAGAGGCTGTTACAATCAAAATTGAAGTTCTTAACAGCTAGTGGTAGACTGGTCAAGGTTAAACGGAGATATAGGCTTCCTCCAACGGTGCCTTCATCAGAGAGAAGGGTCTCTATGCTATTGATGGACGACCACCATAGAGCTTCTATAAGAGATGACAGTGATGAATTTTGCACTCTTGCGAAAGCTCAAATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCAGCTGCGGCTTCTCGAGCAGTCGCAGAAGCCGAAGCAGCAATTGCAGAAGCTGAAGAGGCAGCACGGGAAGCCGAGGCAGCTGAAGCCGATGCCGAAGCAGCACAAACATTTGCAGAAGCCGCAATGAAGACACTGAAAGGAAGAAATCTCCCCAAGATGGTAAAACTGCAAACTATTTATACGGTTGAAAACTTGAAAATGCATTAG 1032 46.03 MGAPKQKWTNQEEAALKAGVVKHGAGKWRTILKDPEFSNVLFLRSNVDLKDKWRNMSVMAHGWGSRDKARLALKRLHPSKKDESNGAQSEAVQSEEESPEAKSVSLSSDIKQIAGPKRTNVRKEEEDEDDEGEEEEEEVEEKIERDARYDCHRWERRLDNLIIEAISTLRERSGSIKSSIASYIEDQYWAPPDFKRLLQSKLKFLTASGRLVKVKRRYRLPPTVPSSERRVSMLLMDDHHRASIRDDSDEFCTLAKAQIDLELAKMRTMTSQEAAAAASRAVAEAEAAIAEAEEAAREAEAAEADAEAAQTFAEAAMKTLKGRNLPKMVKLQTIYTVENLKMH 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9409707 9415019 + Sed0017248.2 Sed07g1257 720121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1257 343 Pfam linker histone H1 and H5 family 159 215 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed07g1257 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Sed07g1257 343 SMART sant 4 59 IPR001005 -
Sed07g1257 343 MobiDBLite consensus disorder prediction 126 141 - -
Sed07g1257 343 SMART h15plus2 155 217 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed07g1257 343 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 150 222 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Sed07g1257 343 CDD SANT_TRF 6 56 - -
Sed07g1257 343 MobiDBLite consensus disorder prediction 77 142 - -
Sed07g1257 343 PANTHER SINGLE MYB HISTONE 4 1 326 IPR044597 GO:0003691(InterPro)
Sed07g1257 343 FunFam Telomere repeat-binding factor 1 2 58 - -
Sed07g1257 343 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Sed07g1257 343 SUPERFAMILY Homeodomain-like 2 63 IPR009057 -
Sed07g1257 343 Coils Coil 122 145 - -
Sed07g1257 343 Gene3D - 2 59 - -
Sed07g1257 343 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Sed07g1257 343 MobiDBLite consensus disorder prediction 85 114 - -
Sed07g1257 343 FunFam Telomere repeat-binding factor 1 8 86 - -
Sed07g1257 343 SUPERFAMILY Winged helix DNA-binding domain 157 229 IPR036390 -
Sed07g1257 343 Coils Coil 275 312 - -
Sed07g1257 343 Gene3D - 155 230 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1257 K09422 - - csv:101218411 427.557
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1257 Sed-Chr7:9409707 Sed13g0429 Sed-Chr13:2825700 2.20E-112 dispersed
Sed07g1256 Sed-Chr7:9409707 Sed07g1257 Sed-Chr7:9409707 6.70E-157 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed13g0429 . 1 340 Single Myb Histone (SMH) Gene Family AT1G49950 54.9 6.6e-68 255.4
Sed07g1256 . 1 329 Single Myb Histone (SMH) Gene Family AT1G49950 54.9 7.3e-67 251.9
Sed07g1257 . 1 329 Single Myb Histone (SMH) Gene Family AT1G49950 54.9 7.3e-67 251.9
Sed10g0741 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.8 1.0e-60 231.5
Sed10g0741 . 1 249 Single Myb Histone (SMH) Gene Family AT5G67580 53.1 1.8e-65 247.3
Sed10g0741 . 1 249 Single Myb Histone (SMH) Gene Family AT3G49850 50.2 2.6e-56 216.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39072 PF00538 Linker_histone 2.50E-08 CL0123 Sed TF