Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1258 ATGCCAAGTTGTTTGGAGAAGCCAAGGAGGGTTCTTCATGGTGGAGGGATCATAAAAAATCCAGAATTCAACAATGGAATTGAAGGATGGAAAATATTTGGAGGAGGAGAAATAAAGCAAGGGCTTTTGAAACAAGGCAACCACATCAATAGCTTCATTGTAGCTCATAAGAGGACCAACCCTAGGGATAGTCTCCATCAATTGGTTCACCTCCAAGATGGGAAGCTCTATAGTTTCTCGGCTTGGGTTCAACTAAGTGAAGGAAATGCACCTGTGGGTGTTCTATTCAGAAATAGTAAAGGGGGTCAAATTCTTCATGGTGGTGAAACCATAGCCAAGCAGGGTTGCTGGAGTTTCCTCAAAGGTGGCATTGTCTCTAACTTTACAGGCAATGCTGAGGTTATTTTTGAGAGTACAAATACAGCCGCAGAAATTTGGATTGATAATGTCTCACTACAACCATTTACAAAGGAGCAATGGAGATCCCACCAAGACAGAAGCATTGACAAGGTGAGGAAAAGCAAGGTGAGACTGCAAGTAACTCAAGCAGACAATAGTAAACTTTCAGGTGCAAAAGTGATCATCAACCAGAATAAACCAAACTTCCCATTTGGGGCTGGAATGAACCACAACATTCTCTCCAGCAAACAATACCAAGACTGGTTTGCATCAAGATTTTCTTATGCAACTTTCACCAATGAACTCAAGTGGTACAGCACTGAGACAGTACCAGGCCATGAGAACTACGCCATCCCCGATGCAATGCTTGCGTTTGCCCAACAACATGGTATTTCAGTAAGAGGGCACAACATTTTCTGGGACGATCCCAACTTCCAGCCACAATGGGTCAAGTCACTCTCCCCAGCAGGTTTGAAGGCGGCAGCTGAAAAAAGAATCAACTCCGTGGTTAATAGATACGCCGGAAAGTTCATTCATTGGGACGTTGTGAATGAAAACGTGCACTTCAGATTCTTCGAGGACAAACTCGGCGCAAACGCCTCTGCAGAGTACTTCAACACAGCCCATAAACTCGACAAGAACACACTTCTTTTCATGAATGAATACAACATCATGGAACAAGCCCACGAAAAAACAGCAACCCCAGCTAACTTCAGAAAGAAACTCCTCGAAATCCTATCGTACCCCGGAAACCAAAACATTCCAGCAGGAATAGGATTGCAGGGCAACTTCGGCCCCGGCGCACCCAACCTGCCATACATGAGATCCGCATTGGACCTTCTAGGATCAACAGGGTACCCCATATGGATCACAGAAGTGTTTTATCAAAAAACCCCAAATCAGGCGCAATACTATGAAGAAGTTCTAAGAGAAGGGTACTCACATCCAGCAGTGAAGGGGATAATCACGTTTGCAGGCCCGCTATCGGCAGGTTTCACAACGCTGCCGCTTGTGGATCTGAATTTCAAGAACACCCCAGCCGGAGATGTTGTGGACAAGCTTCTGGGTGAATGGAAATCGCACAGATTTGAAGTTACAGCCGATGATGAAGGCTTCGTTGAAGCTTCGTTGTTCCATGGAGATTACAATGTCACAGTGCAACATCCTGGAACCAGTTCTTCCGTTTCTGTTGGTATTAGAGTGGCTGAAGATGCCGCTCATCAGAATTTTAATGTTCAACTCCGTCATGATTGA 1653 45.01 MPSCLEKPRRVLHGGGIIKNPEFNNGIEGWKIFGGGEIKQGLLKQGNHINSFIVAHKRTNPRDSLHQLVHLQDGKLYSFSAWVQLSEGNAPVGVLFRNSKGGQILHGGETIAKQGCWSFLKGGIVSNFTGNAEVIFESTNTAAEIWIDNVSLQPFTKEQWRSHQDRSIDKVRKSKVRLQVTQADNSKLSGAKVIINQNKPNFPFGAGMNHNILSSKQYQDWFASRFSYATFTNELKWYSTETVPGHENYAIPDAMLAFAQQHGISVRGHNIFWDDPNFQPQWVKSLSPAGLKAAAEKRINSVVNRYAGKFIHWDVVNENVHFRFFEDKLGANASAEYFNTAHKLDKNTLLFMNEYNIMEQAHEKTATPANFRKKLLEILSYPGNQNIPAGIGLQGNFGPGAPNLPYMRSALDLLGSTGYPIWITEVFYQKTPNQAQYYEEVLREGYSHPAVKGIITFAGPLSAGFTTLPLVDLNFKNTPAGDVVDKLLGEWKSHRFEVTADDEGFVEASLFHGDYNVTVQHPGTSSSVSVGIRVAEDAAHQNFNVQLRHD 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9440391 9443825 - Sed0004315.1 Sed07g1258 720122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1258 550 Pfam Glycosyl hydrolase family 10 200 455 IPR001000 GO:0004553(InterPro)|GO:0005975(InterPro)
Sed07g1258 550 Pfam Carbohydrate binding domain 16 96 IPR003305 GO:0016798(InterPro)
Sed07g1258 550 SUPERFAMILY Galactose-binding domain-like 15 154 IPR008979 -
Sed07g1258 550 PANTHER GLYCOSYL HYDROLASE 4 540 IPR044846 GO:0004553(InterPro)|GO:0005975(InterPro)
Sed07g1258 550 Gene3D - 7 155 - -
Sed07g1258 550 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 196 487 IPR001000 GO:0004553(InterPro)|GO:0005975(InterPro)
Sed07g1258 550 SUPERFAMILY (Trans)glycosidases 188 495 IPR017853 -
Sed07g1258 550 Gene3D Glycosidases 190 496 - -
Sed07g1258 550 SMART glyco_10 235 488 IPR001000 GO:0004553(InterPro)|GO:0005975(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1258 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0203 Sed-Chr1:1609179 Sed07g1258 Sed-Chr7:9440391 7.10E-100 dispersed
Sed07g1258 Sed-Chr7:9440391 Sed13g0432 Sed-Chr13:2855653 8.00E-221 dispersed
Sed10g1953 Sed-Chr10:36256451 Sed07g1258 Sed-Chr7:9440391 1.70E-144 wgd
Sed13g0431 Sed-Chr13:2855004 Sed07g1258 Sed-Chr7:9440391 5.20E-279 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g710 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1030 Cone10ag1047 Lsi03g00578 . . . . . . . . . . . Sed07g1258 Cmo04g00478 . . . . . . Cpe01g00400 Bhi11g01130 Tan01g0624 Cmetu07g1354 . Hepe07g0408 Mch10g0421 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002470 0 2 1 0 1 1 1 1 1 2 1 2 3 2 2 4 2 3 4 1 2 3 2 4 2 2 2 4 2 3 60