Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1264 ATGGAACCAATAGGAGCCATTTCTGAAAGAGAATGGATCTCTCTCAGTGGAACATATGTAGCTGAAGAATCTGATTTCATGGCTAATTTGCTCAATAATTATTGTCTTTCAAATGAGCTAAATTCAGATTTGAGTTTGGAAATCCCATCTGCTTATTGGGCTGCAGCTATGGATGAACAACCTTACACCTTCACTGATTCTCACCCTCTTTGGTTGCCCAATTCTGCCACTTTGTCCTTGGATTTCTCCCTGGAGGATGTCGAGAATGCCGACTCCTCCGCTCGGTTGGACGGCGACAATTCGTGTCGAAAAACAAGGCAATGCAGGCTGCAACAGTCCCCTGCTGACCCTGAAGCTGCTGTAGCTGCTGTCAATGGGAAGAGCCCACAACTTAAGAAAGCCGAGATGACAGCGGAGGAAGAAGCTACGAGAGACGAGAATGTTGCATCAATGTCGGTAGGCGGAAACTCGAAGAAGCGATCCCAAAGTTTACCTGATGTTGAAAAGACGAAGAGGGGTGGGAGGGCACGGAAGATCCCGAAGCTTGGTTCGGCTAGGTGCAACGAAGAGGATCACATTGGGCAATGCACAAGCAGCTTCAGCTCTGAGGATGATTGTAATGAGGCTCAAGAAAACAATGGTGGAATCAGTTCAAGTTCAAGTTTGACCTCAAATGGAAAGACAAGAGCAAGTAGAGGCTCAGCCACAGATCCTCAAAGCCTTTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGGCTGAGAATCTTACAAACCCTCGTCCCGAATGGCACGAAGGTTGATATCAGTACAATGCTTGAAGAAGCTGTTGAATATGTGAAGTTTTTGCAGCTTCAAATCAAGTTGTTGAGCTCTGATGATCTGTGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGTTCATGAAGCATGACAATGCATCACAATAA 966 45.03 MEPIGAISEREWISLSGTYVAEESDFMANLLNNYCLSNELNSDLSLEIPSAYWAAAMDEQPYTFTDSHPLWLPNSATLSLDFSLEDVENADSSARLDGDNSCRKTRQCRLQQSPADPEAAVAAVNGKSPQLKKAEMTAEEEATRDENVASMSVGGNSKKRSQSLPDVEKTKRGGRARKIPKLGSARCNEEDHIGQCTSSFSSEDDCNEAQENNGGISSSSSLTSNGKTRASRGSATDPQSLYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLFMKHDNASQ 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9507937 9509336 - Sed0008565.1 Sed07g1264 720128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1264 321 SMART finulus 240 289 IPR011598 GO:0046983(InterPro)
Sed07g1264 321 FunFam Basic helix-loop-helix transcription factor 235 292 - -
Sed07g1264 321 Pfam Helix-loop-helix DNA-binding domain 244 284 IPR011598 GO:0046983(InterPro)
Sed07g1264 321 Gene3D - 236 292 IPR036638 GO:0046983(InterPro)
Sed07g1264 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 234 300 IPR036638 GO:0046983(InterPro)
Sed07g1264 321 CDD bHLH_AtIND_like 235 297 - -
Sed07g1264 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983(InterPro)
Sed07g1264 321 MobiDBLite consensus disorder prediction 129 241 - -
Sed07g1264 321 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 94 303 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed07g1264 321 MobiDBLite consensus disorder prediction 191 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3002 Sed-Chr1:30253436 Sed07g1264 Sed-Chr7:9507937 8.50E-19 dispersed
Sed03g0881 Sed-Chr3:5449890 Sed07g1264 Sed-Chr7:9507937 1.90E-18 dispersed
Sed07g1264 Sed-Chr7:9507937 Sed08g0596 Sed-Chr8:4098574 4.10E-15 dispersed
Sed13g0445 Sed-Chr13:3024975 Sed07g1264 Sed-Chr7:9507937 2.10E-112 wgd
Sed13g1799 Sed-Chr13:23005146 Sed07g1264 Sed-Chr7:9507937 5.20E-39 wgd
Sed05g2626 Sed-Chr5:37878677 Sed07g1264 Sed-Chr7:9507937 1.20E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39073 PF00010 HLH 1.80E-09 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1264 - - - 0.0