Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g1298 | ATGATGCCTGGAAGTGGCAATGTTGTGGTTCAACTCCAGCCCTTGGATTTGAGCCTCCAGATTCCACACCATTTCAGGTGCCCCGTCTCCCTCGAGCTCATGACCGACCCGGTCACGCTCACCACCGGCCACACCTACGACCGCTCCAGCATCGAGTCATGGGTCGCCACCGGCAACGCCACCTGTCCGGTCACCCGAGCCCTCCTCTCCGACTTCACCCTCATCCCCAACCACACCCTCCGCCGCCTCATCCAGGACTGGTGCGTCGCCAACCGCTCTTTCGGCGTCCTCCGGATTCCCACCCCCAAGCAACCGGCCCACCCCTCAACCCTCACCTCTCTCCTCGCCCAAGCCTCCTCCAAATCCACCGGTTCCGCTTCCAGACTCTCCGCTCTCCGCCGGTTGAAGGCACTCGCTCGCGAATCCGACAAGAACCGCTCCCTCATTTCTTCGCTCAATGCGCCCCAGATTCTTCTGGATCTCGTGTTCTCTGATTCGGATTTGACCCGCGAATCGCTGGCGTTGATTGTGATGTTGCCGCTCACGGAAACGGAGTGCGTTCTCGTCGCCTCAGATCCGCAGCGGATTTGTTTCCTCTCCCATCTTCTCTTTGATTCTTCCGTTGAAGTCCGGATCAACGCCGCCGCCCTCATCGAAACCGTCGTCGCCGGAACTCGAGGCTCCGATCTGCGCGGCCAGATCTGCGCCGTCCACGATTTGTTCGAAGGCGTGGTGGAGATTCTCAGGGATTCGAAGGCGGCGGCGGCGTCTCCAAAAGCACTCAAGGTCGGAATCAAGGCCCTGTTCGCTCTCTGTTTGACGAAACAGACCAGGCACAAGGCCGTTTCTGCAGGAGCCGCCGGGATTCTCCTCGATCGCTTCCCGGACATGGAGAAGTACGACGCCGAACGCGCCCTCGCCACGATCGAACTCATTTGCAGGATTCCGGCGGGTTGCGACGCGTTTTCCGCTCACGCGCTCGCCGTTCCGTTTCTGGTGAAGGTCATTCTCAAGATCTCCGGCCGAGCGACGGAATCGGCGGTCGGGGCGCTGGTGTCGCTGTGCTCGGCGACGGAGGAGAACCGGCGGACGGCGGCGGCGGCGGGGGTTTTTGCGCAGTTGTTGTTTCTGGTGCAGAGCGATTGTACGGAGCGAGTGAAGCGGAAATCGCAGGTGCTGTTGAGGCTTCTTCGAGATTCATGGCCCAGAGATTCCGTTGGGAATTTGGATGATTATGCTTGTAGTGAAATCGTGGTGCCGTTTTGTTGA | 1269 | 60.13 | MMPGSGNVVVQLQPLDLSLQIPHHFRCPVSLELMTDPVTLTTGHTYDRSSIESWVATGNATCPVTRALLSDFTLIPNHTLRRLIQDWCVANRSFGVLRIPTPKQPAHPSTLTSLLAQASSKSTGSASRLSALRRLKALARESDKNRSLISSLNAPQILLDLVFSDSDLTRESLALIVMLPLTETECVLVASDPQRICFLSHLLFDSSVEVRINAAALIETVVAGTRGSDLRGQICAVHDLFEGVVEILRDSKAAAASPKALKVGIKALFALCLTKQTRHKAVSAGAAGILLDRFPDMEKYDAERALATIELICRIPAGCDAFSAHALAVPFLVKVILKISGRATESAVGALVSLCSATEENRRTAAAAGVFAQLLFLVQSDCTERVKRKSQVLLRLLRDSWPRDSVGNLDDYACSEIVVPFC | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 9748321 | 9750003 | - | Sed0018393.1 | Sed07g1298 | 720162 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g1298 | 422 | Pfam | U-box domain | 21 | 92 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed07g1298 | 422 | FunFam | U-box domain-containing protein 31 | 20 | 94 | - | - | |
Sed07g1298 | 422 | SUPERFAMILY | ARM repeat | 122 | 397 | IPR016024 | - | |
Sed07g1298 | 422 | CDD | RING-Ubox_PUB | 22 | 74 | IPR045210 | - | |
Sed07g1298 | 422 | Gene3D | - | 100 | 254 | IPR011989 | - | |
Sed07g1298 | 422 | Gene3D | - | 255 | 397 | IPR011989 | - | |
Sed07g1298 | 422 | PANTHER | WDSAM1 PROTEIN | 19 | 405 | IPR045185 | GO:0061630(InterPro) | |
Sed07g1298 | 422 | SMART | Ubox_2 | 24 | 87 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed07g1298 | 422 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 94 | IPR013083 | - | |
Sed07g1298 | 422 | ProSiteProfiles | U-box domain profile. | 20 | 94 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed07g1298 | 422 | SUPERFAMILY | RING/U-box | 18 | 92 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g3850 | Sed-Chr5:46123207 | Sed07g1298 | Sed-Chr7:9748321 | 1.90E-38 | dispersed | |
Sed06g1382 | Sed-Chr6:38227515 | Sed07g1298 | Sed-Chr7:9748321 | 8.80E-53 | dispersed | |
Sed07g1298 | Sed-Chr7:9748321 | Sed14g0533 | Sed-Chr14:5329167 | 1.80E-42 | dispersed | |
Sed12g1402 | Sed-Chr12:11502734 | Sed07g1298 | Sed-Chr7:9748321 | 2.70E-14 | transposed | |
Sed13g0489 | Sed-Chr13:3337258 | Sed07g1298 | Sed-Chr7:9748321 | 1.60E-176 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g1298 | - | - | - | 0.0 |