Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1298 ATGATGCCTGGAAGTGGCAATGTTGTGGTTCAACTCCAGCCCTTGGATTTGAGCCTCCAGATTCCACACCATTTCAGGTGCCCCGTCTCCCTCGAGCTCATGACCGACCCGGTCACGCTCACCACCGGCCACACCTACGACCGCTCCAGCATCGAGTCATGGGTCGCCACCGGCAACGCCACCTGTCCGGTCACCCGAGCCCTCCTCTCCGACTTCACCCTCATCCCCAACCACACCCTCCGCCGCCTCATCCAGGACTGGTGCGTCGCCAACCGCTCTTTCGGCGTCCTCCGGATTCCCACCCCCAAGCAACCGGCCCACCCCTCAACCCTCACCTCTCTCCTCGCCCAAGCCTCCTCCAAATCCACCGGTTCCGCTTCCAGACTCTCCGCTCTCCGCCGGTTGAAGGCACTCGCTCGCGAATCCGACAAGAACCGCTCCCTCATTTCTTCGCTCAATGCGCCCCAGATTCTTCTGGATCTCGTGTTCTCTGATTCGGATTTGACCCGCGAATCGCTGGCGTTGATTGTGATGTTGCCGCTCACGGAAACGGAGTGCGTTCTCGTCGCCTCAGATCCGCAGCGGATTTGTTTCCTCTCCCATCTTCTCTTTGATTCTTCCGTTGAAGTCCGGATCAACGCCGCCGCCCTCATCGAAACCGTCGTCGCCGGAACTCGAGGCTCCGATCTGCGCGGCCAGATCTGCGCCGTCCACGATTTGTTCGAAGGCGTGGTGGAGATTCTCAGGGATTCGAAGGCGGCGGCGGCGTCTCCAAAAGCACTCAAGGTCGGAATCAAGGCCCTGTTCGCTCTCTGTTTGACGAAACAGACCAGGCACAAGGCCGTTTCTGCAGGAGCCGCCGGGATTCTCCTCGATCGCTTCCCGGACATGGAGAAGTACGACGCCGAACGCGCCCTCGCCACGATCGAACTCATTTGCAGGATTCCGGCGGGTTGCGACGCGTTTTCCGCTCACGCGCTCGCCGTTCCGTTTCTGGTGAAGGTCATTCTCAAGATCTCCGGCCGAGCGACGGAATCGGCGGTCGGGGCGCTGGTGTCGCTGTGCTCGGCGACGGAGGAGAACCGGCGGACGGCGGCGGCGGCGGGGGTTTTTGCGCAGTTGTTGTTTCTGGTGCAGAGCGATTGTACGGAGCGAGTGAAGCGGAAATCGCAGGTGCTGTTGAGGCTTCTTCGAGATTCATGGCCCAGAGATTCCGTTGGGAATTTGGATGATTATGCTTGTAGTGAAATCGTGGTGCCGTTTTGTTGA 1269 60.13 MMPGSGNVVVQLQPLDLSLQIPHHFRCPVSLELMTDPVTLTTGHTYDRSSIESWVATGNATCPVTRALLSDFTLIPNHTLRRLIQDWCVANRSFGVLRIPTPKQPAHPSTLTSLLAQASSKSTGSASRLSALRRLKALARESDKNRSLISSLNAPQILLDLVFSDSDLTRESLALIVMLPLTETECVLVASDPQRICFLSHLLFDSSVEVRINAAALIETVVAGTRGSDLRGQICAVHDLFEGVVEILRDSKAAAASPKALKVGIKALFALCLTKQTRHKAVSAGAAGILLDRFPDMEKYDAERALATIELICRIPAGCDAFSAHALAVPFLVKVILKISGRATESAVGALVSLCSATEENRRTAAAAGVFAQLLFLVQSDCTERVKRKSQVLLRLLRDSWPRDSVGNLDDYACSEIVVPFC 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9748321 9750003 - Sed0018393.1 Sed07g1298 720162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1298 422 Pfam U-box domain 21 92 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed07g1298 422 FunFam U-box domain-containing protein 31 20 94 - -
Sed07g1298 422 SUPERFAMILY ARM repeat 122 397 IPR016024 -
Sed07g1298 422 CDD RING-Ubox_PUB 22 74 IPR045210 -
Sed07g1298 422 Gene3D - 100 254 IPR011989 -
Sed07g1298 422 Gene3D - 255 397 IPR011989 -
Sed07g1298 422 PANTHER WDSAM1 PROTEIN 19 405 IPR045185 GO:0061630(InterPro)
Sed07g1298 422 SMART Ubox_2 24 87 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed07g1298 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 94 IPR013083 -
Sed07g1298 422 ProSiteProfiles U-box domain profile. 20 94 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed07g1298 422 SUPERFAMILY RING/U-box 18 92 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3850 Sed-Chr5:46123207 Sed07g1298 Sed-Chr7:9748321 1.90E-38 dispersed
Sed06g1382 Sed-Chr6:38227515 Sed07g1298 Sed-Chr7:9748321 8.80E-53 dispersed
Sed07g1298 Sed-Chr7:9748321 Sed14g0533 Sed-Chr14:5329167 1.80E-42 dispersed
Sed12g1402 Sed-Chr12:11502734 Sed07g1298 Sed-Chr7:9748321 2.70E-14 transposed
Sed13g0489 Sed-Chr13:3337258 Sed07g1298 Sed-Chr7:9748321 1.60E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1298 - - - 0.0