Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1300 ATGGCGGCCAGAGCTTTGGTTTTCATGGGGTTTCTCCTATTTCTTCAAACGCAGCTTCCTCAAACAATGGCGGATTGCCCTTTGGATTTGAGTGGATCAAACTTTACTTTAGCTGCCTCTATTTGCTCTAACCCCAATGAAAGAGGGAAATGCTGCAGATATATCAATGCATTTGTTGCAGTTTCTGTTGCTCAGCTTTCAAATGCAACAGGTGAACTAGGAGTTTCTTCAAACTTGTCTAACATTTGCCTGCAATCAATAATTCAAACCATGGGACTGTATGGAGTTCCTAGAAATGCCACTCTTTTCTGTGGGGTTGGAACTAAAATCCCTGTGAACTTCGCGTGTAGAGGTCGAGAAACCGTCAATCAGATGCTGGAATCTCCAAAATTCACGAATGTGAGTGTAAATTGCAAATTGCCACTCTTCGAGGAGAGCACTTGTAGGAAGTGTATCAATGCTGGGATTTTATATCTCCGTAATCTGATTGGAAGAGAAGATAATATAACATTTAGTACTTGTCGCGACGCAACCTTTGTTGCACTTGCTAGCCAACTTGATCCTGCTTCCATCATTGATCTTGCAACCTGCTTCTTTGGAATTCAAGGCCTTAACAGGCCTCCAGCTCCATCCCCATCTTTGGCTACACCAGATATTTCCCCAAGTCCTGCTGCAAGTTCGGGGCCACTGATGCAAGGTGTTTCTGATGATAAAAGTCATCAACATCATTCCTTCCATCTTACATTAGGTGCAGGTATTGGCATTGCAGTGACCATAGCTTCTGTATTGATGCTGGTTATCTTGATTGTGCTTATTCAAAGGAAGAGTAGAGAGCTAAAGGATTCCGAAAATACGGATGCCAACTCATCAAAATCATTTCCTTCTCGATCCATAAAAAATTATCAAGAAGGACCTTCTATGTTTAAAAAATTCAGCTATAAGGAGATCAAGAAGGCAACAGATAGTTTTAGTACAACAATTGGACAAGGCGGATACGGAACCGTTTATAAAGCTCAATTCAGCAATGACTTAGTGGTAGCTGTGAAGAGGATGAACAAAGTCTCCGAGCAGGAGGAGGATGAATTTGGCAGAGAAATAGAGCTGCTCGCAAGATTACATCACCGGCATCTTGTTGCTTTAAAAGGCTTTTGCGTTGACAAACATGAACGGTTCCTTGTGTACGAGTATATGGCTAATGGAAGCTTGAAGGATCATCTTCATGCTCCTGACAGGACCCCTCTAAGTTGGCAGAGGAGAATACAAATTGCCATCGATGTCGCCAATGCTCTGGAGTACCTTCATTATTATTGTGATCCCCCACTGTGCCATAGAGATATCAAGTCCAGCAACATTTTACTGGATGACAACTTTGTTGCTAAGGTTGCAGATTTCGACCTTGCGCACGCTTCAAAGGGCGGTTCTGTTTTCTTTGAACCTGTAAATACCAATATCTGCGGAACGCCAGGCTATATGGATCCCGAGTACGTTATCACGCAAGAGCTTACAGAGAAAAGTGATATATACAGCTATGGCGTGCTGCTTCTGGAATTAGTAACCGGCAGACGTGTGATACAAGATGGAAAGAATATAATCGAATGGTCTCAGGTGTACGTGGTTCCGGATTCAAAGATATCTGAACTACTACTAGATCCAAGGATCAAGAGTTGTTTTAACTTGGAACAACTTCGCGCGGTTGTGTCGGTTGTGAGATGGTGTGTCGAGGGGGAAGGCAGGGCGAGGCCCTCGATTAAACAGGTGCTTCGGGTATTGTACGAGAGTTTGGACCCGATACATGAAGGGCTGGTGGAAGCTGTTGATGATGAAGAATATGGAGGGACTGAAGGCAAACACAGCATGAGCAAGAGAACAATGCATAAAAGTGAAGTGATTTTTCACAGTGGAGAAGGAAGGTATCTTGCTTCTTCATCAAGCACATCAAGATCATATTGTAGTAGAAACTTTTTGCTTGAAACTGGTTCACCACAATCTCCTACCAATATTGTATCAGCCTCAGATCAATTGTTTTAG 2028 42.95 MAARALVFMGFLLFLQTQLPQTMADCPLDLSGSNFTLAASICSNPNERGKCCRYINAFVAVSVAQLSNATGELGVSSNLSNICLQSIIQTMGLYGVPRNATLFCGVGTKIPVNFACRGRETVNQMLESPKFTNVSVNCKLPLFEESTCRKCINAGILYLRNLIGREDNITFSTCRDATFVALASQLDPASIIDLATCFFGIQGLNRPPAPSPSLATPDISPSPAASSGPLMQGVSDDKSHQHHSFHLTLGAGIGIAVTIASVLMLVILIVLIQRKSRELKDSENTDANSSKSFPSRSIKNYQEGPSMFKKFSYKEIKKATDSFSTTIGQGGYGTVYKAQFSNDLVVAVKRMNKVSEQEEDEFGREIELLARLHHRHLVALKGFCVDKHERFLVYEYMANGSLKDHLHAPDRTPLSWQRRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDDNFVAKVADFDLAHASKGGSVFFEPVNTNICGTPGYMDPEYVITQELTEKSDIYSYGVLLLELVTGRRVIQDGKNIIEWSQVYVVPDSKISELLLDPRIKSCFNLEQLRAVVSVVRWCVEGEGRARPSIKQVLRVLYESLDPIHEGLVEAVDDEEYGGTEGKHSMSKRTMHKSEVIFHSGEGRYLASSSSTSRSYCSRNFLLETGSPQSPTNIVSASDQLF 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9779688 9784568 + Sed0016009.1 Sed07g1300 720164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1300 675 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524(InterPro)
Sed07g1300 675 Pfam Protein kinase domain 324 588 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1300 675 FunFam Putative receptor-like protein kinase 289 396 - -
Sed07g1300 675 CDD STKc_IRAK 327 590 - -
Sed07g1300 675 FunFam Putative receptor-like protein kinase 397 598 - -
Sed07g1300 675 MobiDBLite consensus disorder prediction 280 301 - -
Sed07g1300 675 MobiDBLite consensus disorder prediction 209 238 - -
Sed07g1300 675 ProSiteProfiles Protein kinase domain profile. 321 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1300 675 SMART serkin_6 321 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1300 675 PANTHER OS01G0750732 PROTEIN 186 631 IPR050885 -
Sed07g1300 675 SUPERFAMILY Protein kinase-like (PK-like) 301 591 IPR011009 -
Sed07g1300 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1300 675 Gene3D Transferase(Phosphotransferase) domain 1 397 605 - -
Sed07g1300 675 MobiDBLite consensus disorder prediction 286 301 - -
Sed07g1300 675 Gene3D Phosphorylase Kinase; domain 1 283 396 - -
Sed07g1300 675 MobiDBLite consensus disorder prediction 218 234 - -
Sed07g1300 675 Pfam SPARK 23 164 IPR043891 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1300 Sed-Chr7:9779688 Sed13g0493 Sed-Chr13:3364519 1.1e-312 dispersed
Sed07g1300 Sed-Chr7:9779688 Sed07g1301 Sed-Chr7:9779688 1.10E-272 tandem
Sed13g0492 Sed-Chr13:3364519 Sed07g1300 Sed-Chr7:9779688 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79457 PF00069 Pkinase 5.90E-51 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1300 - - - 0.0