Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g1321 | ATGATGATGAAGGGTAATTTTTTGTCTCAACAACAATTGGTGATGGAAGAAAATTTGTCCAATTTGACTTCTGCTTCTGGTGAAGCTGCAACTGGAAGTGTTTCTTCAGCCAATAAAACTGAATTCCCAAATCAATATTTTGCTCCTCAATCCCACCAACCACCTCCTCATAAGAAGAAGCGAAACCTCCCTGGAAACCCCGACCCGGATGCGGACGTGATAGCGTTGTCGCCGAAGACGCTGATGGCGACGAATCGGTTCTTGTGCGAGATCTGCAACAAGGGGTTTCAGAGGGATCAGAATCTTCAGCTGCATAGGAGAGGGCACAATCTTCCATGGAAATTAAAGCAAAGATCAAACAAAGAAGTGATAAAGAAGAAGGTTTATGTTTGTCCAGAGCCAAGCTGTGTCCACCATGATCCATCAAGAGCTCTTGGGGACCTAACAGGAATAAAAAAGCACTTTTACAGAAAGCATGGTGAAAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAATTTGTGGCACAAAAGAGTACAGATGTGACTGTGGAACTCTATTTTCAAGGAGAGATAGTTTCATTACACACAGAGCCTTTTGTGATGCATTAGCAGATGAAAGTACAAGATCAGCCATGGCTTTAAACCCTCTTCTCACTTCTTACAACAATAATTCACAAGAATTTTCAAATAATAATAATAATAATAATAATAATAATATTTTCGCTCTCAAACGAGATCACTTCATCAACAACAACAGCAGCAACAACAACAACAATAATAATTTGAGAGCGGAAATCCCAACGTGGCTGCAGCCAACAACCGATCTCCGAGGGGATATGTTCGTGGGGAGCGGGCACGAGCATCCCCATCATGAAACCCTAAACCCTAGCCCTAACCCTAGCGGAGTCGGGGGTGGGCCCGGACCAGCTGCAGCTTCAGTTTCTTGTTCTCCTCATATTTCAGCCACTGCACTGCTGCAGAAGGCAGCCCAAATGGGTGCAACCATGAGTAGTACCACTACCACGAGTGGCTCTTTGCTCAGGCCCCACAAGCTGGTTCACGTGTCTACAGGTAATTTTGGGGAGATAGGTTTAGGCTCATGTGAAGGAGGAAGAGGAGCAGTGAGTTGTAGTAGTAGCAGCCGTAGTGATTATGGGAATAAAGCTGCTTCCATTTCTGCTTCTGCTTCTCCCCCAACCACTTTTCTTCACGACATGATCAATTCCCATCCCTTCCTCCACGACTCCGCCTTCAACGACGTCCCGGCCTTCGCCCCGACACACCACCTCCTCGCCACTGCCCCCACCGCCACTGCCGTCCACCCGTCGTCGGGCGGTCGAAGCGATGGGACGCTGACGAGGGATTTCTTGGGCCTTCGCCCTCTCTCTCACGGAGATATTCTAAGCCTTGCTGGTTTTGGAAACTGCATTGTTCCCAATTCTGCCAATCTCCACAGCCAAATGCAGAAGCCGTGGCAGGGTTAG | 1521 | 47.01 | MMMKGNFLSQQQLVMEENLSNLTSASGEAATGSVSSANKTEFPNQYFAPQSHQPPPHKKKRNLPGNPDPDADVIALSPKTLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFYRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESTRSAMALNPLLTSYNNNSQEFSNNNNNNNNNNIFALKRDHFINNNSSNNNNNNNLRAEIPTWLQPTTDLRGDMFVGSGHEHPHHETLNPSPNPSGVGGGPGPAAASVSCSPHISATALLQKAAQMGATMSSTTTTSGSLLRPHKLVHVSTGNFGEIGLGSCEGGRGAVSCSSSSRSDYGNKAASISASASPPTTFLHDMINSHPFLHDSAFNDVPAFAPTHHLLATAPTATAVHPSSGGRSDGTLTRDFLGLRPLSHGDILSLAGFGNCIVPNSANLHSQMQKPWQG | 506 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 10092360 | 10096353 | + | Sed0011577.1 | Sed07g1321 | 720185 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g1321 | 506 | Gene3D | Classic Zinc Finger | 142 | 221 | - | - | |
Sed07g1321 | 506 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 125 | 159 | - | - | |
Sed07g1321 | 506 | MobiDBLite | consensus disorder prediction | 295 | 327 | - | - | |
Sed07g1321 | 506 | Pfam | Zinc finger, C2H2 type | 87 | 109 | IPR013087 | - | |
Sed07g1321 | 506 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 45 | 473 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed07g1321 | 506 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 142 | 221 | - | - | |
Sed07g1321 | 506 | FunFam | protein indeterminate-domain 12-like | 66 | 135 | - | - | |
Sed07g1321 | 506 | Gene3D | Classic Zinc Finger | 66 | 135 | - | - | |
Sed07g1321 | 506 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 190 | 225 | - | - | |
Sed07g1321 | 506 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 89 | 109 | IPR013087 | - | |
Sed07g1321 | 506 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 87 | 109 | IPR013087 | - | |
Sed07g1321 | 506 | MobiDBLite | consensus disorder prediction | 44 | 70 | - | - | |
Sed07g1321 | 506 | SUPERFAMILY | beta-beta-alpha zinc fingers | 86 | 184 | IPR036236 | - | |
Sed07g1321 | 506 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 163 | 187 | - | - | |
Sed07g1321 | 506 | SMART | c2h2final6 | 164 | 184 | IPR013087 | - | |
Sed07g1321 | 506 | SMART | c2h2final6 | 87 | 109 | IPR013087 | - | |
Sed07g1321 | 506 | SMART | c2h2final6 | 129 | 159 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g2223 | Sed-Chr6:45918264 | Sed07g1321 | Sed-Chr7:10092360 | 1.30E-82 | dispersed | |
Sed07g0446 | Sed-Chr7:3325701 | Sed07g1321 | Sed-Chr7:10092360 | 3.60E-87 | dispersed | |
Sed07g1321 | Sed-Chr7:10092360 | Sed13g1864 | Sed-Chr13:23640561 | 1.70E-87 | dispersed | |
Sed06g0083 | Sed-Chr6:477339 | Sed07g1321 | Sed-Chr7:10092360 | 5.20E-96 | wgd | |
Sed06g2222 | Sed-Chr6:45918264 | Sed07g1321 | Sed-Chr7:10092360 | 9.90E-106 | wgd | |
Sed07g1321 | Sed-Chr7:10092360 | Sed09g1680 | Sed-Chr9:40159673 | 1.60E-162 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39079 | None | None | None | None | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g1321 | K25870 | - | csv:101220200 | 639.417 |