Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1321 ATGATGATGAAGGGTAATTTTTTGTCTCAACAACAATTGGTGATGGAAGAAAATTTGTCCAATTTGACTTCTGCTTCTGGTGAAGCTGCAACTGGAAGTGTTTCTTCAGCCAATAAAACTGAATTCCCAAATCAATATTTTGCTCCTCAATCCCACCAACCACCTCCTCATAAGAAGAAGCGAAACCTCCCTGGAAACCCCGACCCGGATGCGGACGTGATAGCGTTGTCGCCGAAGACGCTGATGGCGACGAATCGGTTCTTGTGCGAGATCTGCAACAAGGGGTTTCAGAGGGATCAGAATCTTCAGCTGCATAGGAGAGGGCACAATCTTCCATGGAAATTAAAGCAAAGATCAAACAAAGAAGTGATAAAGAAGAAGGTTTATGTTTGTCCAGAGCCAAGCTGTGTCCACCATGATCCATCAAGAGCTCTTGGGGACCTAACAGGAATAAAAAAGCACTTTTACAGAAAGCATGGTGAAAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAATTTGTGGCACAAAAGAGTACAGATGTGACTGTGGAACTCTATTTTCAAGGAGAGATAGTTTCATTACACACAGAGCCTTTTGTGATGCATTAGCAGATGAAAGTACAAGATCAGCCATGGCTTTAAACCCTCTTCTCACTTCTTACAACAATAATTCACAAGAATTTTCAAATAATAATAATAATAATAATAATAATAATATTTTCGCTCTCAAACGAGATCACTTCATCAACAACAACAGCAGCAACAACAACAACAATAATAATTTGAGAGCGGAAATCCCAACGTGGCTGCAGCCAACAACCGATCTCCGAGGGGATATGTTCGTGGGGAGCGGGCACGAGCATCCCCATCATGAAACCCTAAACCCTAGCCCTAACCCTAGCGGAGTCGGGGGTGGGCCCGGACCAGCTGCAGCTTCAGTTTCTTGTTCTCCTCATATTTCAGCCACTGCACTGCTGCAGAAGGCAGCCCAAATGGGTGCAACCATGAGTAGTACCACTACCACGAGTGGCTCTTTGCTCAGGCCCCACAAGCTGGTTCACGTGTCTACAGGTAATTTTGGGGAGATAGGTTTAGGCTCATGTGAAGGAGGAAGAGGAGCAGTGAGTTGTAGTAGTAGCAGCCGTAGTGATTATGGGAATAAAGCTGCTTCCATTTCTGCTTCTGCTTCTCCCCCAACCACTTTTCTTCACGACATGATCAATTCCCATCCCTTCCTCCACGACTCCGCCTTCAACGACGTCCCGGCCTTCGCCCCGACACACCACCTCCTCGCCACTGCCCCCACCGCCACTGCCGTCCACCCGTCGTCGGGCGGTCGAAGCGATGGGACGCTGACGAGGGATTTCTTGGGCCTTCGCCCTCTCTCTCACGGAGATATTCTAAGCCTTGCTGGTTTTGGAAACTGCATTGTTCCCAATTCTGCCAATCTCCACAGCCAAATGCAGAAGCCGTGGCAGGGTTAG 1521 47.01 MMMKGNFLSQQQLVMEENLSNLTSASGEAATGSVSSANKTEFPNQYFAPQSHQPPPHKKKRNLPGNPDPDADVIALSPKTLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFYRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESTRSAMALNPLLTSYNNNSQEFSNNNNNNNNNNIFALKRDHFINNNSSNNNNNNNLRAEIPTWLQPTTDLRGDMFVGSGHEHPHHETLNPSPNPSGVGGGPGPAAASVSCSPHISATALLQKAAQMGATMSSTTTTSGSLLRPHKLVHVSTGNFGEIGLGSCEGGRGAVSCSSSSRSDYGNKAASISASASPPTTFLHDMINSHPFLHDSAFNDVPAFAPTHHLLATAPTATAVHPSSGGRSDGTLTRDFLGLRPLSHGDILSLAGFGNCIVPNSANLHSQMQKPWQG 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10092360 10096353 + Sed0011577.1 Sed07g1321 720185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1321 506 Gene3D Classic Zinc Finger 142 221 - -
Sed07g1321 506 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 125 159 - -
Sed07g1321 506 MobiDBLite consensus disorder prediction 295 327 - -
Sed07g1321 506 Pfam Zinc finger, C2H2 type 87 109 IPR013087 -
Sed07g1321 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 45 473 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed07g1321 506 FunFam protein indeterminate-domain 5, chloroplastic-like 142 221 - -
Sed07g1321 506 FunFam protein indeterminate-domain 12-like 66 135 - -
Sed07g1321 506 Gene3D Classic Zinc Finger 66 135 - -
Sed07g1321 506 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 190 225 - -
Sed07g1321 506 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Sed07g1321 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Sed07g1321 506 MobiDBLite consensus disorder prediction 44 70 - -
Sed07g1321 506 SUPERFAMILY beta-beta-alpha zinc fingers 86 184 IPR036236 -
Sed07g1321 506 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 163 187 - -
Sed07g1321 506 SMART c2h2final6 164 184 IPR013087 -
Sed07g1321 506 SMART c2h2final6 87 109 IPR013087 -
Sed07g1321 506 SMART c2h2final6 129 159 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2223 Sed-Chr6:45918264 Sed07g1321 Sed-Chr7:10092360 1.30E-82 dispersed
Sed07g0446 Sed-Chr7:3325701 Sed07g1321 Sed-Chr7:10092360 3.60E-87 dispersed
Sed07g1321 Sed-Chr7:10092360 Sed13g1864 Sed-Chr13:23640561 1.70E-87 dispersed
Sed06g0083 Sed-Chr6:477339 Sed07g1321 Sed-Chr7:10092360 5.20E-96 wgd
Sed06g2222 Sed-Chr6:45918264 Sed07g1321 Sed-Chr7:10092360 9.90E-106 wgd
Sed07g1321 Sed-Chr7:10092360 Sed09g1680 Sed-Chr9:40159673 1.60E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39079 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1321 K25870 - csv:101220200 639.417