Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1330 ATGGGTTCTTACAAGAAGAGGAAGAAGAGCATGCCACCATCACAAGTTATGATGCTACCACCCCCACCTCCTAATGAGGAATGTGCAATATCATGTACAGAGCCACTTACCTATACGCCTCCTGGTGCACCGTGTGGTTGCGTGTGGCCAATTCAAGCCAAAATCAGCCTTGATGTTGCAATATACACATTTTTCCCTCTGGTTTCTGAGTTTGCAAAGGAAATTGCAGTTAGTCTCAGTCTGAACCATAGCCAAGTTCGAATTATGGGAGCTGATGCTGCTAGCCAGCAGTTGGATAAAACAACGGTCCTCGTCAACTTGGTACCGAGAGGATCGAAATTCAATCAAACCACAGCATATTCGATATATCAGAAATTTTGGCTGAGCAAAATATCCATCAACGCTTCTTTGTTTGGTAGATATCAAGTACTAAATGTCAAATATCCAGGTATCTCATCCATTGATGATGGTTTGAACACTAGGAATACTAATGCTGGAAATGCTATAAAACCGTTCGGAGTTGACGTGCCAAAAAGTAGAAAAGAAGAGCTTAGTGGAAACATGATCGCGGTGATTACGATATCGTCGTTCACTGCCTTTGTAATGTGTGTTGGTCTTGCTTGGCTTTGCCTGTTGAGATGCAGAGTGTCTGCACATCAACCATCACAAGCTCCACAAAACTTGATAGCCTCATCTACAAAACCATCAGGCACCGCTGAATTGATAATGGTTGAAAGTGAACCTGGCTCTTCATCAACACTTCGTGCTGCCGATCCTATGACGTATATAGGATCGGCAACGAACTTCACATTGAAAGGCATGGAGAAAGCCACAGACAACTTTGATGCTGCAAGAATATTAGGAGAAGGTGGTTTTGGAATTGTTTACAGTGGCAGTTTAGATGATGGAAAGGATGTGGCTGTGAAGGTTCTCAAAAGGCATAATCGACACGGTATTTGCGAATTCTTGGCAGAAGTCGAGATGCTGAGTCGTCTACACCATAGAAATCTTGTTAAGTTGATTGGTATCTGTACTGAAGATCAGATTCGTTGCCTCGTATATGAATTGGTTCCTAATGGAAGCGTTGAATCGCATTTACATGGCATTGACAAGTTAACTGGTCCTCTTGACTGGGATGCCCGCATGAAGATTGCCCTTGGTGCTGCTCGAGGCCTTGCCTATCTGCACGAAGACTCGAATCCTCGAGTCATTCATCGAGATTTCAAAGCTAGCAACATATTGTTGGAATATGACTTTACAGCAAAAGTTTCGGATTTTGGATTAGCTAGAACTGCATTAGAGGAAGGAAACAAGCACATCTCAACCCATGTCATGGGAACTTTTGGATATCTAGCTCCAGAATACGCAATGACTGGCCATCTTCTTGTAAAGAGCGACGTCTACAGCTATGGTGTTGTTCTTCTCGAGTTAATTACAGGAAGAAAGCCAGTTGACTTGTCGCTTCCACCTGGGCAAGAAAATCTCGTTACTTGGGCTCGTCCGCTCCTCACGAGCAAGGAGGGGTTAGATGTCATAACAGACTCAGCTATTAAGTCTGATATCTCCATTGATAGCCTGGCCAGAGTAGCAGCAATTGCTTCAATGTGTGTGCAGCCCGAAGTGTCTCACAGACCGTTTATGGGCGAGGTAGTTCAAGCTCTAAAGCTTGTTTGCAGTGAATTTGAAGAGACTAATGAGCCCGGTTCACAAAGTTACAGCCGAGATGAACTTTTAAGTTACATGGATAGTAAATTTGGAGGGATTTCAGGTGAAATACTAAACACTGTGGAGACCTCACATTGGTTTCATTCGGAAAAGGCGACGAATGTAGGATTATCAGCCTCGGATTTGATCAGCACGTCTGCAAGATTTGAGGGACAGGAACTGGTGTCTTCGAGATGGTATTCATCAAACTCAGAACCGTTGAGAATGGGAAGAAAGAGGGAGATATGGCACAAGCTAAGAAGTTTGTCTCGAGGTAGCATCAGTGAACATGGCTTTTCTTCAAAGTTTTGGCCTGGATTTCGTTAG 2031 43.72 MGSYKKRKKSMPPSQVMMLPPPPPNEECAISCTEPLTYTPPGAPCGCVWPIQAKISLDVAIYTFFPLVSEFAKEIAVSLSLNHSQVRIMGADAASQQLDKTTVLVNLVPRGSKFNQTTAYSIYQKFWLSKISINASLFGRYQVLNVKYPGISSIDDGLNTRNTNAGNAIKPFGVDVPKSRKEELSGNMIAVITISSFTAFVMCVGLAWLCLLRCRVSAHQPSQAPQNLIASSTKPSGTAELIMVESEPGSSSTLRAADPMTYIGSATNFTLKGMEKATDNFDAARILGEGGFGIVYSGSLDDGKDVAVKVLKRHNRHGICEFLAEVEMLSRLHHRNLVKLIGICTEDQIRCLVYELVPNGSVESHLHGIDKLTGPLDWDARMKIALGAARGLAYLHEDSNPRVIHRDFKASNILLEYDFTAKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELITGRKPVDLSLPPGQENLVTWARPLLTSKEGLDVITDSAIKSDISIDSLARVAAIASMCVQPEVSHRPFMGEVVQALKLVCSEFEETNEPGSQSYSRDELLSYMDSKFGGISGEILNTVETSHWFHSEKATNVGLSASDLISTSARFEGQELVSSRWYSSNSEPLRMGRKREIWHKLRSLSRGSISEHGFSSKFWPGFR 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10125157 10129042 + Sed0023340.7 Sed07g1330 720194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1330 676 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 257 356 - -
Sed07g1330 676 Gene3D Transferase(Phosphotransferase) domain 1 357 576 - -
Sed07g1330 676 PANTHER OS01G0750732 PROTEIN 29 576 IPR050885 -
Sed07g1330 676 ProSitePatterns Protein kinases ATP-binding region signature. 287 309 IPR017441 GO:0005524(InterPro)
Sed07g1330 676 Gene3D Phosphorylase Kinase; domain 1 253 356 - -
Sed07g1330 676 ProSiteProfiles Protein kinase domain profile. 281 557 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1330 676 MobiDBLite consensus disorder prediction 1 20 - -
Sed07g1330 676 CDD STKc_IRAK 287 555 - -
Sed07g1330 676 FunFam Receptor-like serine/threonine-protein kinase ALE2 357 575 - -
Sed07g1330 676 Pfam Protein tyrosine and serine/threonine kinase 284 554 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1330 676 SUPERFAMILY Protein kinase-like (PK-like) 257 554 IPR011009 -
Sed07g1330 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1330 Sed-Chr7:10125157 Sed09g1684 Sed-Chr9:40185063 0.00E+00 dispersed
Sed07g1329 Sed-Chr7:10125157 Sed07g1330 Sed-Chr7:10125157 0.00E+00 tandem
Sed07g1330 Sed-Chr7:10125157 Sed07g1331 Sed-Chr7:10125157 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79466 PF07714 PK_Tyr_Ser-Thr 1.60E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1330 - - - 0.0