Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1372 ATGATCGTTCTTAAACATTTATTTTTCGTTTTTCCGAGTGGCTTAGCTTTTCTTATCCTTGTTCAAGCTCAAGATCAATCTGGTTTCATCAGCTTAGATTGTGGATTGGCAACAGATAAAAGTTACACTGAACCAATAACAAAACTTCGATTTACTTCTGATGATGCCTATATTAACAGTGGTGAAAGCAAAAGCTTATCTGCAACTTATCAAAAAGTTTTCAGCCAGCAATATCATCATGTTAGAAGTTTTCCTCAGGGACGTAGGAATTGCTACAACATAAGCATAAGAAAAGATACCAAGTATTTGATGCGAGCTGGTTTCTTGTACGGAAATTACGACAAGCTAAATAAACTACCGAAATTCGATCTTTACTTTGGCGATACCTTATGGGGGACAATAAACATCACGGATGAAAGCATTGATATCGCAACAGATGTCATACATGTAACCACAAACAGTCATATACAAATTTGTCTAGTGAACACAAATAATGGGACTCCATTTATCTCTTCTTTGGAATTCAGACCTTTGCCCAGTGAGAGTTATGAGGTGCTGTCGAAATCATTGTTGCTTCAAATTCGACTCGATTACGGTGCTACAACAAATAGAACATACAGGTTCCCCGATGACATATACGATCGCTATTGGCTGCCTTACAACTGGTTCGAGTGGACAACGATAAGTACCACACTTAAAATAGATGTTAATAGTAATAGTGATAGTTACCGGCCAGGATCTGCTGTGATGGGAACTGCTGCTGTTCGAATAGATACGAGCAAGCCCTTGGAGATCTGGTGGGAGCCTGAAGATGTAAACACCAAGTATCATGTATACATGCACTTTGCAGAAGTTGAAGATCTACAGGACAATCAAACAAGAGGATTCAACATTAACTACAATGGGGATCATTGGTATGGACCTCTTATTCCTGTCCATTTGATTACAACAACAATTTTCATTCGAAAACCATTGCCGGTGCCAACTAAAAAACATCTATTTTCACTTGTTCCAATTGAAAATTCAACACACCCTCCGATCATAAATGCCATAGAAGTTTATTCTCCTATTGATTTCTTAGAGCTAGCATCAAATCAAGGAGATGTGGATGCAATCAGAAAAATCAAATCAACTTATGGAATAGTCAAAGATTGGGAAGGAGATCCATGCATTCCAAGAGCATATCCTTGGGAGGGTATAAATTGTAGCAATGAAACTACTAGAATGGTGTCTTTGAACTTGTCATCAAGTGGATTGACAGGGGAGATCTCTTCAGATATATCCAATCTAGAAATGATACAAACTCTGGACTTGTCAAACAATAACTTGACAGGAAATATTCCTGACTTTCTGTCTAAATTATCAAACCTCAAAGTCTTAAAGTTAGAGAACAACAAACTTACGGGGTCCGTTCCATCTGAACTCGTTACGAAATTCGATGATGGTTTATTATTCTTAAGTGTTGGAGGGAATCCAAATCTTGAAGTATGTCTGTCAGATTCATGTGCAAAGAAGAAGAATGTTGTTATTCCAATAGCAGCATCAATTGGCGGATTGGTAGTCATTGCTGCAATTGCAAGTATCATCTTTTGGATTGTTAAATCAAAGAAGAGACAGAAAAATGAAGCTATTGTTTCTCTAATAGATCATTCAGAAAGCAAACACCAAATGAGTGGCTTATTAGAAACAAAAAGGCGACAGTTTACATATTCAGAAGTATCGACGATGACGAATAATTTTGAGAGGATTTTGGGCGAAGGAGGTTTTGGGATGGTTTACTATGGCTTTATAGACGGCATTCAAGTAGCCGTGAAGTTACTTTCTGAAGCATCAGGACAAGGTTATCAACAATTTCAAGCAGAGGTTACACTTCTTTTGAGAGTTCACCATAAGAACTTGACAAGTCTTGTGGGATATTTGTATGAAGGAGATAAACTTGGGCTGATTTATGAATTCATGGCCAATGGAAACTTAGCCGAGCATCTTTCAGGGAAAAGTTCACATGTCTTAAATTGGCAAGATAGACTCCGAATTTCCATGGATGCAGCACAAGGATTGGAGTACCTACATGATGGTTGTACACCGCCCATAATCCACAGAGATGTGAAGACAACAAACATCTTATTGACAGAGAACTTGCACGGCAAACTAGGAGATTTTGGCTTGTCCAAAAGCTTCCCAACCGACGGCGACAACACCGGCATGCGCACCGTTGTTGCTGGCACTATGGGCTACCTTGATCCAGAGTACTATAAGTCAAACAAGCTGACAAAGAACAGTGATGTGTACAGCTTTGGAGTAACTTTAATGGAGATAATCAGTTGCAGAGCTGTGATATCAAGAATAGAAAGACACGTTCATATCAGTGAATGGGTAAACTCATTGGTGGTTGAAGGGGACATTCATGGCATAATTGACAGAAGACTGGATAGAAATTATGACACAAACTCAGCTTGGAAGGCTGTGGAAATAGCCATGAATTGTGTATCTGAGAATCCTGCAAGAAGACCCACCATGAACCAAGTGGTGGCAGAACTGAAGAACTGCTTAGCCATAGAATTGGAACGGACGCCGGAGAATCGAGCCTTGGGTTCGACGAATCCCATCAACACAATGTCCATTGTTATGGATTACAGTGAATCGGGTCCAATGGCAAGGTGA 2661 39.42 MIVLKHLFFVFPSGLAFLILVQAQDQSGFISLDCGLATDKSYTEPITKLRFTSDDAYINSGESKSLSATYQKVFSQQYHHVRSFPQGRRNCYNISIRKDTKYLMRAGFLYGNYDKLNKLPKFDLYFGDTLWGTINITDESIDIATDVIHVTTNSHIQICLVNTNNGTPFISSLEFRPLPSESYEVLSKSLLLQIRLDYGATTNRTYRFPDDIYDRYWLPYNWFEWTTISTTLKIDVNSNSDSYRPGSAVMGTAAVRIDTSKPLEIWWEPEDVNTKYHVYMHFAEVEDLQDNQTRGFNINYNGDHWYGPLIPVHLITTTIFIRKPLPVPTKKHLFSLVPIENSTHPPIINAIEVYSPIDFLELASNQGDVDAIRKIKSTYGIVKDWEGDPCIPRAYPWEGINCSNETTRMVSLNLSSSGLTGEISSDISNLEMIQTLDLSNNNLTGNIPDFLSKLSNLKVLKLENNKLTGSVPSELVTKFDDGLLFLSVGGNPNLEVCLSDSCAKKKNVVIPIAASIGGLVVIAAIASIIFWIVKSKKRQKNEAIVSLIDHSESKHQMSGLLETKRRQFTYSEVSTMTNNFERILGEGGFGMVYYGFIDGIQVAVKLLSEASGQGYQQFQAEVTLLLRVHHKNLTSLVGYLYEGDKLGLIYEFMANGNLAEHLSGKSSHVLNWQDRLRISMDAAQGLEYLHDGCTPPIIHRDVKTTNILLTENLHGKLGDFGLSKSFPTDGDNTGMRTVVAGTMGYLDPEYYKSNKLTKNSDVYSFGVTLMEIISCRAVISRIERHVHISEWVNSLVVEGDIHGIIDRRLDRNYDTNSAWKAVEIAMNCVSENPARRPTMNQVVAELKNCLAIELERTPENRALGSTNPINTMSIVMDYSESGPMAR 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10410603 10414899 - Sed0023587.1 Sed07g1372 720236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1372 886 Pfam Leucine Rich Repeat 433 454 IPR001611 GO:0005515(InterPro)
Sed07g1372 886 Pfam Leucine Rich Repeat 456 475 IPR001611 GO:0005515(InterPro)
Sed07g1372 886 SUPERFAMILY Protein kinase-like (PK-like) 557 846 IPR011009 -
Sed07g1372 886 FunFam Leucine-rich repeat receptor-like kinase 368 496 - -
Sed07g1372 886 PANTHER OS07G0107800 PROTEIN-RELATED 20 854 - -
Sed07g1372 886 ProSitePatterns Protein kinases ATP-binding region signature. 584 605 IPR017441 GO:0005524(InterPro)
Sed07g1372 886 SUPERFAMILY L domain-like 394 494 - -
Sed07g1372 886 ProSiteProfiles Protein kinase domain profile. 578 850 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1372 886 Gene3D Phosphorylase Kinase; domain 1 559 652 - -
Sed07g1372 886 FunFam Leucine-rich repeat receptor-like protein kinase 554 652 - -
Sed07g1372 886 Gene3D Ribonuclease Inhibitor 369 481 IPR032675 -
Sed07g1372 886 Pfam Protein tyrosine and serine/threonine kinase 580 846 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1372 886 Pfam Malectin-like domain 32 355 IPR024788 -
Sed07g1372 886 SMART serkin_6 578 850 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1372 886 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1372 886 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 653 858 - -
Sed07g1372 886 Gene3D Transferase(Phosphotransferase) domain 1 653 862 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0117 Sed-Chr6:761497 Sed07g1372 Sed-Chr7:10410603 3.00E-75 dispersed
Sed07g1372 Sed-Chr7:10410603 Sed07g1380 Sed-Chr7:10474169 7.1e-312 dispersed
Sed07g1371 Sed-Chr7:10402239 Sed07g1372 Sed-Chr7:10410603 3.60E-239 tandem
Sed07g1372 Sed-Chr7:10410603 Sed07g1373 Sed-Chr7:10417057 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79473 PF12819 Malectin_like 1.10E-108 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1372 - - - 0.0