Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1414 ATGTCTTGGCAAACTTACGTCGATGATCACCTCATGTGTGAGATCGAAGGCAACCATCTCGCCTCCGCTGCCATCATCGGGCACGACGCCAGTGTTTGGGCGCAGAGCTCCTCGTTTCCTCAGTTTAAAGCAGAGGAAATCTCTGCAATTATGAAGGATTTGGATCAGCCTGGTTCTCTTGCCCCAACTGGTTTACATCTTGGAGGGACTAAATATATGGTTATCCAGGGAGAGCCTGGAGCTGTTGTTCGTGGGAAGAAGGGTGCTGGTGGAATCACTGTAAAGAAAACAGAGAAAGCTTTGATTATTGGTATATATGATGAACCAGTGACTCCAGGCCAATGCAATATGGTTGTTGAAAGGTTGGGAGATTACCTGATCGAACAGGGTTTGTAG 396 47.22 MSWQTYVDDHLMCEIEGNHLASAAIIGHDASVWAQSSSFPQFKAEEISAIMKDLDQPGSLAPTGLHLGGTKYMVIQGEPGAVVRGKKGAGGITVKKTEKALIIGIYDEPVTPGQCNMVVERLGDYLIEQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10840870 10843530 + Sed0015588.1 Sed07g1414 720278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1414 131 CDD PROF 2 130 IPR005455 GO:0003779(InterPro)
Sed07g1414 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Sed07g1414 131 Pfam Profilin 1 131 IPR048278 GO:0003779(InterPro)
Sed07g1414 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Sed07g1414 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Sed07g1414 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Sed07g1414 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Sed07g1414 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Sed07g1414 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Sed07g1414 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Sed07g1414 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Sed07g1414 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Sed07g1414 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Sed07g1414 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Sed07g1414 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Sed07g1414 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Sed07g1414 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Sed07g1414 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Sed07g1414 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Sed07g1414 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Sed07g1414 131 FunFam Profilin 1 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1414 K05759 - - cit:102614190 234.187
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1414 Sed-Chr7:10840870 Sed11g0035 Sed-Chr11:334700 2.20E-60 dispersed
Sed06g2183 Sed-Chr6:45612222 Sed07g1414 Sed-Chr7:10840870 3.00E-57 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 739.2
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 3.2e-213 738.4
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 3.2e-213 738.4
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.2e-213 738.0
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.2e-213 738.0
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 9.4e-213 736.9
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 1.2e-212 736.5
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT2G37620 95.2 1.2e-212 736.5
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 1.6e-212 736.1
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.1e-212 735.7
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 3.6e-212 734.9
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 6.1e-212 734.2
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 8.0e-212 733.8
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT2G37620 90.2 3.6e-79 293.1
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT2G37620 99.2 8.9e-70 261.9
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 6.5e-214 740.7
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.9e-213 739.2
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 4.2e-213 738.0
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 9.4e-213 736.9
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 9.4e-213 736.9
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.6e-212 736.1
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT5G59370 96.0 2.7e-212 735.3
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT5G59370 95.5 6.1e-212 734.2
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 2.6e-210 728.8
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 4.4e-210 728.0
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 5.7e-210 727.6
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 5.7e-210 727.6
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 1.3e-209 726.5
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT5G59370 92.1 2.5e-80 297.0
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT5G59370 97.6 4.4e-69 259.6
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.9e-214 741.9
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 8.5e-214 740.3
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.9e-213 739.2
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 4.2e-213 738.0
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 4.2e-213 738.0
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 7.2e-213 737.3
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 1.2e-212 736.5
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT3G46520 95.8 2.7e-212 735.3
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 2.0e-210 729.2
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.6e-210 728.8
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.6e-210 728.8
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 5.7e-210 727.6
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 7.5e-210 727.2
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT3G46520 92.7 1.1e-80 298.1
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT3G46520 97.6 4.4e-69 259.6
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 7.7e-215 743.8
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.3e-214 743.0
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.7e-214 742.7
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.7e-214 742.7
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.1e-213 740.0
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 3.2e-213 738.4
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 4.2e-213 738.0
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.6e-212 736.1
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.6e-212 736.1
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 2.1e-212 735.7
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 2.7e-212 735.3
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 4.7e-212 734.6
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 6.1e-212 734.2
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT3G12110 90.9 5.6e-80 295.8
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT3G12110 98.4 2.0e-69 260.8
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 8.3e-209 723.8
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 8.3e-209 723.8
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.4e-208 722.2
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 4.1e-208 721.5
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 9.1e-208 720.3
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.1e-208 720.3
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.1e-208 720.3
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.2e-207 719.9
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT3G18780 91.5 1.6e-207 719.5
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 2.7e-207 718.8
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT3G18780 91.5 4.5e-207 718.0
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT3G18780 91.2 1.0e-206 716.8
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT3G18780 91.2 1.7e-206 716.1
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT3G18780 87.8 1.4e-78 291.2
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT3G18780 94.5 8.3e-68 255.4
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.8e-209 725.3
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.8e-209 725.3
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 8.3e-209 723.8
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 1.4e-208 723.0
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 3.1e-208 721.8
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 3.1e-208 721.8
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 3.1e-208 721.8
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.1e-208 721.5
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 5.3e-208 721.1
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 9.1e-208 720.3
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 1.6e-207 719.5
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT1G49240 91.5 3.5e-207 718.4
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT1G49240 91.5 5.9e-207 717.6
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT1G49240 87.8 1.4e-78 291.2
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT1G49240 94.5 8.3e-68 255.4
Sed10g0485 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.4e-216 749.6
Sed05g3846 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.4e-216 749.6
Sed01g0035 . 1 377 Cytoskeleton Gene Families AT5G09810 98.1 4.1e-216 748.0
Sed10g1808 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 6.5e-214 740.7
Sed06g0331 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 1.5e-213 739.6
Sed07g2481 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.2e-212 736.5
Sed07g2482 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.2e-212 736.5
Sed02g0367 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 1.6e-212 736.1
Sed03g0086 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 2.1e-212 735.7
Sed04g2828 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 3.6e-212 734.9
Sed01g2744 . 1 377 Cytoskeleton Gene Families AT5G09810 95.2 6.1e-212 734.2
Sed12g1245 . 1 377 Cytoskeleton Gene Families AT5G09810 95.2 5.2e-211 731.1
Sed03g3008 . 1 377 Cytoskeleton Gene Families AT5G09810 94.4 3.4e-210 728.4
Sed14g0483 . 1 161 Cytoskeleton Gene Families AT5G09810 90.2 3.6e-79 293.1
Sed14g0482 . 1 127 Cytoskeleton Gene Families AT5G09810 98.4 2.6e-69 260.4
Sed03g1753 . 1 131 Cytoskeleton Gene Families AT2G19760 80.2 2.2e-60 229.2
Sed11g0036 . 1 131 Cytoskeleton Gene Families AT2G19760 78.6 4.6e-58 221.5
Sed11g0035 . 1 133 Cytoskeleton Gene Families AT2G19760 75.2 7.4e-56 214.2
Sed03g1754 . 1 133 Cytoskeleton Gene Families AT2G19760 75.2 1.3e-55 213.4
Sed07g1414 . 1 131 Cytoskeleton Gene Families AT2G19760 71.8 9.1e-54 207.2
Sed06g2183 . 1 131 Cytoskeleton Gene Families AT2G19760 71.8 7.7e-53 204.1
Sed03g1753 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 5.5e-59 224.6
Sed11g0036 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 3.0e-57 218.8
Sed11g0035 . 1 133 Cytoskeleton Gene Families AT4G29350 75.2 7.4e-56 214.2
Sed03g1754 . 1 133 Cytoskeleton Gene Families AT4G29350 73.7 4.8e-55 211.5
Sed07g1414 . 1 131 Cytoskeleton Gene Families AT4G29350 73.3 5.3e-54 208.0
Sed06g2183 . 1 131 Cytoskeleton Gene Families AT4G29350 71.0 2.2e-52 202.6
Sed11g0036 . 1 87 Cytoskeleton Gene Families AT5G56600 79.3 2.9e-37 152.1
Sed03g1754 . 1 133 Cytoskeleton Gene Families AT4G29340 82.8 2.2e-63 239.2
Sed11g0035 . 1 133 Cytoskeleton Gene Families AT4G29340 82.8 2.2e-63 239.2
Sed07g1414 . 1 131 Cytoskeleton Gene Families AT4G29340 73.9 9.0e-57 217.2
Sed03g1753 . 1 131 Cytoskeleton Gene Families AT4G29340 74.6 1.2e-56 216.9
Sed11g0036 . 1 131 Cytoskeleton Gene Families AT4G29340 72.4 1.7e-55 213.0
Sed06g2183 . 1 131 Cytoskeleton Gene Families AT4G29340 70.1 7.9e-53 204.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112