Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1415 ATGGGCAAAGCTACCAGGTGGTTGAAGGGTCTGTTGGGGATCAAGAAAGACAAGGAACCATCTGGGATTTCTAATTCGAATCCGACGCCGTTCTCCGGCGACAAAAAGGATAAGAAACGGTGGAGTTTTGCTAAATCTGCTAGAGATTCCGGCCACGCGCCGCCGGCTGCGGCGGCGGACTCTGCTTGGTTCAGATCCTACATTTCTGATTCTGAGAAAGAGCAGAACAAGCACGCTATTGCTGTGGCTGCCGCCACCGCCGCCGCAGCTGACGCTGCCGTCGCCGCGGCTCAGGCGGCTGTCGCCGTCGTCCGGCTGACTAGTCAGGGAAGAGGGTCTGTGTATGTTACTGGAAGAGATAGATGGGCTGCTGTGAAGATTCAAGCTGCTTTTAGGGGCTATTTGGCTAGAAAGGCCCTGAGAGCTCTGAAAGGGCTTGTGAAATTGCAGGCTGTGGTTAGAGGATTTCTTGTGAGAAAAAGAGCTGCTGCTACTCTTCACAGTATGCAAGCCCTTTTTCGAGCCCAAACTGCCCTTAGGACGCAAAGGGCTCGTCGATCCTTCAATAAAGAGAACCGGTTTATCCCCGAGATTAGGCTTCGAAAATCGGTGGAAGAAACAAGAAGTGAATTCCATAGTAAGAGGTTGTCTGTAGCATCATCCTATGAAACCTGCATCAACTCATTGGATGAGAGCCCCAAAATTGTTGAAATTGACACATACCGCACCCGGTCGAGGTCTCGTAGGTACATCTCTGCATTGTCGTCCGAATGCAGAAGAGATGATGTACCTCTCCAAGCAATCACGTCGCCATTGCCATGCCCAAGTCGACCTCGTGTGTCTATGCCTGATTGCCACAATGTGCTTCGAGATTTCGAATGGTGCTTGATGGGCGAAGACTGCAAGTTCCCTACGGCTCACAGCACACCCCGGCTATCAAGTTCATTCGGCTCTGCCAACGTGCCGGTCACCCCGTCGAAGAGCGTCTGCGGTGACAGCTTCTATAGGCCGTACATGAACTGCCCGAATTACATGTCGAGCACGCAATCGTTCAAGGCGAAACTGAGGTCTCAAAGTGCCCCAAAGCAAAGGCCAGAGCCAGGATCCAAGAAGAAGCTCTCATTGAATGAAATGATGGCAGCAAGAAACAGTTTAAGCAGTGTAAGAATGCAGAGACCAAGTCACCAAATGCTTCAAGAAGAAAATGAAGAAGAAGATGATGATCAAACTTCATATGGTTTTGAGTGA 1248 50.56 MGKATRWLKGLLGIKKDKEPSGISNSNPTPFSGDKKDKKRWSFAKSARDSGHAPPAAAADSAWFRSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSVYVTGRDRWAAVKIQAAFRGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTALRTQRARRSFNKENRFIPEIRLRKSVEETRSEFHSKRLSVASSYETCINSLDESPKIVEIDTYRTRSRSRRYISALSSECRRDDVPLQAITSPLPCPSRPRVSMPDCHNVLRDFEWCLMGEDCKFPTAHSTPRLSSSFGSANVPVTPSKSVCGDSFYRPYMNCPNYMSSTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEMMAARNSLSSVRMQRPSHQMLQEENEEEDDDQTSYGFE 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10848107 10850235 - Sed0011052.1 Sed07g1415 720279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1415 415 ProSiteProfiles IQ motif profile. 120 148 - -
Sed07g1415 415 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515(InterPro)
Sed07g1415 415 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515(InterPro)
Sed07g1415 415 MobiDBLite consensus disorder prediction 352 415 - -
Sed07g1415 415 MobiDBLite consensus disorder prediction 379 395 - -
Sed07g1415 415 MobiDBLite consensus disorder prediction 16 56 - -
Sed07g1415 415 PANTHER IQ-DOMAIN 5-RELATED 6 392 - -
Sed07g1415 415 ProSiteProfiles Zinc finger C3H1-type profile. 279 310 IPR000571 GO:0046872(InterPro)
Sed07g1415 415 MobiDBLite consensus disorder prediction 400 415 - -
Sed07g1415 415 SMART iq_5 119 141 IPR000048 GO:0005515(InterPro)
Sed07g1415 415 SMART iq_5 142 163 IPR000048 GO:0005515(InterPro)
Sed07g1415 415 Gene3D - 61 146 - -
Sed07g1415 415 ProSiteProfiles IQ motif profile. 144 171 - -
Sed07g1415 415 MobiDBLite consensus disorder prediction 32 46 - -
Sed07g1415 415 Pfam Protein of unknown function (DUF4005) 309 390 IPR025064 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1415 Sed-Chr7:10848107 Sed08g0818 Sed-Chr8:6625789 1.80E-76 dispersed
Sed12g1812 Sed-Chr12:29224881 Sed07g1415 Sed-Chr7:10848107 1.30E-68 wgd
Sed06g2181 Sed-Chr6:45593304 Sed07g1415 Sed-Chr7:10848107 3.00E-54 wgd
Sed07g1415 Sed-Chr7:10848107 Sed09g1621 Sed-Chr9:39659527 1.00E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1415 - - - 0.0