Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1415 ATGGGCAAAGCTACCAGGTGGTTGAAGGGTCTGTTGGGGATCAAGAAAGACAAGGAACCATCTGGGATTTCTAATTCGAATCCGACGCCGTTCTCCGGCGACAAAAAGGATAAGAAACGGTGGAGTTTTGCTAAATCTGCTAGAGATTCCGGCCACGCGCCGCCGGCTGCGGCGGCGGACTCTGCTTGGTTCAGATCCTACATTTCTGATTCTGAGAAAGAGCAGAACAAGCACGCTATTGCTGTGGCTGCCGCCACCGCCGCCGCAGCTGACGCTGCCGTCGCCGCGGCTCAGGCGGCTGTCGCCGTCGTCCGGCTGACTAGTCAGGGAAGAGGGTCTGTGTATGTTACTGGAAGAGATAGATGGGCTGCTGTGAAGATTCAAGCTGCTTTTAGGGGCTATTTGGCTAGAAAGGCCCTGAGAGCTCTGAAAGGGCTTGTGAAATTGCAGGCTGTGGTTAGAGGATTTCTTGTGAGAAAAAGAGCTGCTGCTACTCTTCACAGTATGCAAGCCCTTTTTCGAGCCCAAACTGCCCTTAGGACGCAAAGGGCTCGTCGATCCTTCAATAAAGAGAACCGGTTTATCCCCGAGATTAGGCTTCGAAAATCGGTGGAAGAAACAAGAAGTGAATTCCATAGTAAGAGGTTGTCTGTAGCATCATCCTATGAAACCTGCATCAACTCATTGGATGAGAGCCCCAAAATTGTTGAAATTGACACATACCGCACCCGGTCGAGGTCTCGTAGGTACATCTCTGCATTGTCGTCCGAATGCAGAAGAGATGATGTACCTCTCCAAGCAATCACGTCGCCATTGCCATGCCCAAGTCGACCTCGTGTGTCTATGCCTGATTGCCACAATGTGCTTCGAGATTTCGAATGGTGCTTGATGGGCGAAGACTGCAAGTTCCCTACGGCTCACAGCACACCCCGGCTATCAAGTTCATTCGGCTCTGCCAACGTGCCGGTCACCCCGTCGAAGAGCGTCTGCGGTGACAGCTTCTATAGGCCGTACATGAACTGCCCGAATTACATGTCGAGCACGCAATCGTTCAAGGCGAAACTGAGGTCTCAAAGTGCCCCAAAGCAAAGGCCAGAGCCAGGATCCAAGAAGAAGCTCTCATTGAATGAAATGATGGCAGCAAGAAACAGTTTAAGCAGTGTAAGAATGCAGAGACCAAGTCACCAAATGCTTCAAGAAGAAAATGAAGAAGAAGATGATGATCAAACTTCATATGGTTTTGAGTGA 1248 50.56 MGKATRWLKGLLGIKKDKEPSGISNSNPTPFSGDKKDKKRWSFAKSARDSGHAPPAAAADSAWFRSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSVYVTGRDRWAAVKIQAAFRGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTALRTQRARRSFNKENRFIPEIRLRKSVEETRSEFHSKRLSVASSYETCINSLDESPKIVEIDTYRTRSRSRRYISALSSECRRDDVPLQAITSPLPCPSRPRVSMPDCHNVLRDFEWCLMGEDCKFPTAHSTPRLSSSFGSANVPVTPSKSVCGDSFYRPYMNCPNYMSSTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEMMAARNSLSSVRMQRPSHQMLQEENEEEDDDQTSYGFE 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10848107 10850235 - Sed0011052.1 Sed07g1415 720279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1415 415 ProSiteProfiles IQ motif profile. 120 148 - -
Sed07g1415 415 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515(InterPro)
Sed07g1415 415 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515(InterPro)
Sed07g1415 415 MobiDBLite consensus disorder prediction 352 415 - -
Sed07g1415 415 MobiDBLite consensus disorder prediction 379 395 - -
Sed07g1415 415 MobiDBLite consensus disorder prediction 16 56 - -
Sed07g1415 415 PANTHER IQ-DOMAIN 5-RELATED 6 392 - -
Sed07g1415 415 ProSiteProfiles Zinc finger C3H1-type profile. 279 310 IPR000571 GO:0046872(InterPro)
Sed07g1415 415 MobiDBLite consensus disorder prediction 400 415 - -
Sed07g1415 415 SMART iq_5 119 141 IPR000048 GO:0005515(InterPro)
Sed07g1415 415 SMART iq_5 142 163 IPR000048 GO:0005515(InterPro)
Sed07g1415 415 Gene3D - 61 146 - -
Sed07g1415 415 ProSiteProfiles IQ motif profile. 144 171 - -
Sed07g1415 415 MobiDBLite consensus disorder prediction 32 46 - -
Sed07g1415 415 Pfam Protein of unknown function (DUF4005) 309 390 IPR025064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1415 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1415 Sed-Chr7:10848107 Sed08g0818 Sed-Chr8:6625789 1.80E-76 dispersed
Sed12g1812 Sed-Chr12:29224881 Sed07g1415 Sed-Chr7:10848107 1.30E-68 wgd
Sed06g2181 Sed-Chr6:45593304 Sed07g1415 Sed-Chr7:10848107 3.00E-54 wgd
Sed07g1415 Sed-Chr7:10848107 Sed09g1621 Sed-Chr9:39659527 1.00E-167 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g2817 . 1 472 IQD Protein Family AT3G52290 53.3 1.4e-100 364.4
Sed01g2818 . 1 472 IQD Protein Family AT3G52290 53.3 1.4e-100 364.4
Sed03g0040 . 1 451 IQD Protein Family AT3G52290 53.1 5.7e-89 325.9
Sed03g0042 . 1 451 IQD Protein Family AT3G52290 53.1 5.7e-89 325.9
Sed03g0041 . 2 172 IQD Protein Family AT2G26410 57.6 1.2e-40 165.6
Sed03g0043 . 2 172 IQD Protein Family AT2G26410 57.6 1.2e-40 165.6
Sed07g2286 . 84 258 IQD Protein Family AT2G26410 50.6 1.9e-38 158.3
Sed08g1171 . 1 407 IQD Protein Family AT3G22190 55.5 1.1e-92 338.2
Sed08g1170 . 1 407 IQD Protein Family AT3G22190 55.5 1.1e-92 338.2
Sed12g1498 . 1 398 IQD Protein Family AT3G22190 56.3 4.7e-88 322.8
Sed13g1870 . 1 437 IQD Protein Family AT2G26180 61.0 3.3e-118 422.9
Sed13g1871 . 11 425 IQD Protein Family AT2G26180 61.4 1.1e-110 397.9
Sed11g1830 . 1 435 IQD Protein Family AT2G26180 55.2 7.0e-100 362.1
Sed10g0264 . 1 271 IQD Protein Family AT2G33990 52.3 3.5e-65 246.1
Sed14g1502 . 1 281 IQD Protein Family AT2G33990 51.2 1.5e-63 240.7
Sed14g1502 . 1 237 IQD Protein Family AT3G15050 52.3 1.4e-58 224.2
Sed04g1560 . 43 216 IQD Protein Family AT3G15050 62.7 8.0e-54 208.4
Sed09g0603 . 1 499 IQD Protein Family AT4G00820 51.5 9.8e-115 411.8
Sed09g0603 . 1 499 IQD Protein Family AT1G01110 50.5 7.7e-112 402.1
Sed09g1621 . 1 396 IQD Protein Family AT3G16490 52.7 9.5e-75 278.5
Sed07g1415 . 1 393 IQD Protein Family AT3G16490 51.4 1.0e-68 258.5
Sed08g0818 . 1 356 IQD Protein Family AT3G16490 52.6 6.8e-65 245.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004070 3 1 3 2 3 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 1 0 44