Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g1415 | ATGGGCAAAGCTACCAGGTGGTTGAAGGGTCTGTTGGGGATCAAGAAAGACAAGGAACCATCTGGGATTTCTAATTCGAATCCGACGCCGTTCTCCGGCGACAAAAAGGATAAGAAACGGTGGAGTTTTGCTAAATCTGCTAGAGATTCCGGCCACGCGCCGCCGGCTGCGGCGGCGGACTCTGCTTGGTTCAGATCCTACATTTCTGATTCTGAGAAAGAGCAGAACAAGCACGCTATTGCTGTGGCTGCCGCCACCGCCGCCGCAGCTGACGCTGCCGTCGCCGCGGCTCAGGCGGCTGTCGCCGTCGTCCGGCTGACTAGTCAGGGAAGAGGGTCTGTGTATGTTACTGGAAGAGATAGATGGGCTGCTGTGAAGATTCAAGCTGCTTTTAGGGGCTATTTGGCTAGAAAGGCCCTGAGAGCTCTGAAAGGGCTTGTGAAATTGCAGGCTGTGGTTAGAGGATTTCTTGTGAGAAAAAGAGCTGCTGCTACTCTTCACAGTATGCAAGCCCTTTTTCGAGCCCAAACTGCCCTTAGGACGCAAAGGGCTCGTCGATCCTTCAATAAAGAGAACCGGTTTATCCCCGAGATTAGGCTTCGAAAATCGGTGGAAGAAACAAGAAGTGAATTCCATAGTAAGAGGTTGTCTGTAGCATCATCCTATGAAACCTGCATCAACTCATTGGATGAGAGCCCCAAAATTGTTGAAATTGACACATACCGCACCCGGTCGAGGTCTCGTAGGTACATCTCTGCATTGTCGTCCGAATGCAGAAGAGATGATGTACCTCTCCAAGCAATCACGTCGCCATTGCCATGCCCAAGTCGACCTCGTGTGTCTATGCCTGATTGCCACAATGTGCTTCGAGATTTCGAATGGTGCTTGATGGGCGAAGACTGCAAGTTCCCTACGGCTCACAGCACACCCCGGCTATCAAGTTCATTCGGCTCTGCCAACGTGCCGGTCACCCCGTCGAAGAGCGTCTGCGGTGACAGCTTCTATAGGCCGTACATGAACTGCCCGAATTACATGTCGAGCACGCAATCGTTCAAGGCGAAACTGAGGTCTCAAAGTGCCCCAAAGCAAAGGCCAGAGCCAGGATCCAAGAAGAAGCTCTCATTGAATGAAATGATGGCAGCAAGAAACAGTTTAAGCAGTGTAAGAATGCAGAGACCAAGTCACCAAATGCTTCAAGAAGAAAATGAAGAAGAAGATGATGATCAAACTTCATATGGTTTTGAGTGA | 1248 | 50.56 | MGKATRWLKGLLGIKKDKEPSGISNSNPTPFSGDKKDKKRWSFAKSARDSGHAPPAAAADSAWFRSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSVYVTGRDRWAAVKIQAAFRGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTALRTQRARRSFNKENRFIPEIRLRKSVEETRSEFHSKRLSVASSYETCINSLDESPKIVEIDTYRTRSRSRRYISALSSECRRDDVPLQAITSPLPCPSRPRVSMPDCHNVLRDFEWCLMGEDCKFPTAHSTPRLSSSFGSANVPVTPSKSVCGDSFYRPYMNCPNYMSSTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEMMAARNSLSSVRMQRPSHQMLQEENEEEDDDQTSYGFE | 415 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 10848107 | 10850235 | - | Sed0011052.1 | Sed07g1415 | 720279 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g1415 | 415 | ProSiteProfiles | IQ motif profile. | 120 | 148 | - | - | |
Sed07g1415 | 415 | Pfam | IQ calmodulin-binding motif | 121 | 141 | IPR000048 | GO:0005515(InterPro) | |
Sed07g1415 | 415 | Pfam | IQ calmodulin-binding motif | 147 | 161 | IPR000048 | GO:0005515(InterPro) | |
Sed07g1415 | 415 | MobiDBLite | consensus disorder prediction | 352 | 415 | - | - | |
Sed07g1415 | 415 | MobiDBLite | consensus disorder prediction | 379 | 395 | - | - | |
Sed07g1415 | 415 | MobiDBLite | consensus disorder prediction | 16 | 56 | - | - | |
Sed07g1415 | 415 | PANTHER | IQ-DOMAIN 5-RELATED | 6 | 392 | - | - | |
Sed07g1415 | 415 | ProSiteProfiles | Zinc finger C3H1-type profile. | 279 | 310 | IPR000571 | GO:0046872(InterPro) | |
Sed07g1415 | 415 | MobiDBLite | consensus disorder prediction | 400 | 415 | - | - | |
Sed07g1415 | 415 | SMART | iq_5 | 119 | 141 | IPR000048 | GO:0005515(InterPro) | |
Sed07g1415 | 415 | SMART | iq_5 | 142 | 163 | IPR000048 | GO:0005515(InterPro) | |
Sed07g1415 | 415 | Gene3D | - | 61 | 146 | - | - | |
Sed07g1415 | 415 | ProSiteProfiles | IQ motif profile. | 144 | 171 | - | - | |
Sed07g1415 | 415 | MobiDBLite | consensus disorder prediction | 32 | 46 | - | - | |
Sed07g1415 | 415 | Pfam | Protein of unknown function (DUF4005) | 309 | 390 | IPR025064 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g1415 | Sed-Chr7:10848107 | Sed08g0818 | Sed-Chr8:6625789 | 1.80E-76 | dispersed | |
Sed12g1812 | Sed-Chr12:29224881 | Sed07g1415 | Sed-Chr7:10848107 | 1.30E-68 | wgd | |
Sed06g2181 | Sed-Chr6:45593304 | Sed07g1415 | Sed-Chr7:10848107 | 3.00E-54 | wgd | |
Sed07g1415 | Sed-Chr7:10848107 | Sed09g1621 | Sed-Chr9:39659527 | 1.00E-167 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g1415 | - | - | - | 0.0 |