Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1420 ATGGCATTGGCAAGGTCTTATGAGAGAGTTGATGATGCCTTCAAGGACAAAACTCTGGCACCATACTCGGTTGGATCTACAGCTTTGGTTGTACTTTTGTCACCTTCCCAAATAATTGTTGCCAACTGTGGTGACTCTAGAGCATTGCTTTGTCGTGGGGGTCAAGCCATCCCTTTGACGGTTGACCACAAGATTAGTAGGCCAGATGAATATGCTAGACTTGCCAAGGGAGGAGCAAGAATTCTGTTTGTGGGCTGCCCTAGGGTCGAGGGAGTGCTGACTATGACCAGAGCAATAGGTGATCATTACTTAAAACCATGGATTACATCTGAGCCGGAGGTTACATTTATGTCAAGGACTGAAGAGGATGACTGTTTGATTCTGGCAAGTGATGGAGTATGGGATGTCTTGTCAAATGATGATGTGATGAAGATGACTTGCAGCATTCTGAGGAGGCAACGCAGGAAGTTGGCGTTTGGTGGAACTCGTAATGCAATTTATCCAGCACAATGTGCTGCAAATCAAATCCGCAAGGTTACTACGAGGACTTGTATGGGGGCTAATGTGGACAATACTTTGGCGAATGGAGCAAAAAGCTACCCATAG 606 45.87 MALARSYERVDDAFKDKTLAPYSVGSTALVVLLSPSQIIVANCGDSRALLCRGGQAIPLTVDHKISRPDEYARLAKGGARILFVGCPRVEGVLTMTRAIGDHYLKPWITSEPEVTFMSRTEEDDCLILASDGVWDVLSNDDVMKMTCSILRRQRRKLAFGGTRNAIYPAQCAANQIRKVTTRTCMGANVDNTLANGAKSYP 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10955097 10967829 - Sed0009907.1 Sed07g1420 720284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1420 201 ProSiteProfiles PPM-type phosphatase domain profile. 1 201 IPR001932 -
Sed07g1420 201 CDD PP2Cc 2 156 IPR001932 -
Sed07g1420 201 Gene3D - 1 194 IPR036457 -
Sed07g1420 201 Pfam Protein phosphatase 2C 3 160 IPR001932 -
Sed07g1420 201 SUPERFAMILY PP2C-like 2 152 IPR036457 -
Sed07g1420 201 PANTHER PROTEIN PHOSPHATASE 2 176 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed07g1420 201 SMART PP2C_4 1 197 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1420 Sed-Chr7:10955097 Sed08g1784 Sed-Chr8:32608837 1.90E-39 dispersed
Sed12g1820 Sed-Chr12:29419803 Sed07g1420 Sed-Chr7:10955097 2.10E-39 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1420 K14497 - vvi:100258395 229.18