Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1429 ATGGCTATGTCCTGCAAGGATGGTAACAAACATGCTATTGATAATGGCAAATACGTTAGGTACACACCGGAGCAGGTTGAAGCCCTTGAGCGGCTATATCATGAATGTCCAAAACCCAGTTCCATTCGTCGTCAGCAGCTTATTAGAGAGTGCCCCATTCTCTCTAATATCGAGCCTAAGCAAATCAAAGTCTGGTTTCAAAATAGAAGATGTCGTGAAAAACAGAGGAAAGAGTCATCTCGGCTTCAAGCTGTGAACAGGAAGCTTTCGGCAATGAATAAGCTTTTAATGGAGGAGAATGATAGGCTGCAGAAGCAGGTTTCTCAGCTGGTGTATGAGAATGGCTATTTCCGCCAGCATACTCAGAGTACGACGCTTGGAGCTAAAGATACAAGTTGTGAACCGGTGGTAACTAGCGGTCAACACAATTTGACATCTCAGCATCCTCCAAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGTGTGGCTGCACGTGCCTGCGGCCTGGTGGGTCTAGAACCTACTAGAGTTGCTGAAATCCTTAAGGATCAGCCATCGTGGTTTCGCGATTGCCGAGCTGTGGATGTTCTGAATGTGCTGCCAACAGCAAATGGGGGAACCATTGAGCTTCTTTACATGCAGCTCTATGCGCCTACAACATTGGCGCCTGCTAGGGACTTCTGGTTGTTACGCTACACTTCTGTTTTGGAAGATGGTAGCCTTGTGATCTGTGAGAGATCACTTAAGAACACCCAGAATGGTCCAACCATGCCTCCTGTGCAGCATTTTGTTAGAGCAGAGATGCTGCCGAGTGGATATCTGATTAGACCATGTGAAGGAGGTGGTTCTATCATTCATATTGTCGACCATATGGATCTGGAGCCATGGAGTGTTCCAGAAGTATTGCGTCCTTTGTATGAATCATCCACTGTTCTAGCTCAAAAGATGACTATGGCGGCCCTACGCCAGTTGAGACAGATAGGTCATGAAGTTTCACAGTCGAATGTAACAGGCTGGGGTAGACGCCCTGCAGCCTTACGTGCACTTGGTCAGAGGCTAACCCGGGGTTTTAATGAGGCACTTAATGGGTTTAATGACGAAGGGTGGTCCGTGATGGGAAATGATGGCTTGGATGATGTGACTATTCTCATAAATTCATCTCCTGACAAGCTAATGGGATTGAACATTTCATTTGCAAATGGATTTTCTTCCATCAGTAATTCAGTTTTATGTGCTAGAGCATCGATGCTATTGCAGAATGTGCCTCCTGCAATTCTACTGAGGTTTCTGCGGGAGCACAGATCGGAGTGGGCAGACAACAACATTGATGCTTATTCAGCTGCTGCTGTTAAGGTTGGCCCATGGAGTTTACCAGGCTCCCGAGTTGGAAGTTTCGGTAATCAAGTAATACTTCCACTGGCAAATACCATTGAACACGAAGAGTTCTTAGAAGTGATTAAACTGGAAGGCATTGGCCATACACCTGAGGATGCAATGATGCCTAGAGAAATGTTTCTTCTGCAACTTTGCAGTGGAATGGATGAAAATGCCTTTGGAACATGTGCTGAACTAATATTTGCTCCAATCGATGCATCTTTTGCTGATGACGCGCCTCTTTTACCCTCAGGGTTTCGGATCATACCACTTGATTCTGGGAAGGAAGCATCCAGCCCAAATCGCACACTCGACCTTGCTTCTGCTCTTGAAATTGGGCCGGCTGGAAATAAAGCACCAAACGACTCTGCAAATTCTGGCTGTGCAAGGTCTGTAATGACGATTGCTTTTGAATTTGCATGTGAGAGCCATATGCAAGAACATGTAGCATCCATGGCTCGGCAATATGTTCGTAGTATTATATCATCTGTCCAGAGAGTTGCATTAGCTCTCTCTCCGTCTCATTTAAGTTCACACGCCGGACTACGATCTCCCCTTGGTACTCCTGAAGCACAAACACTTGCTCGCTGGATCAGCAACAGTTACCGGTGCTACTTAGGAGTGGAGCTATTAAAATCCGGAAACGAAGGTGGAGAGCTTGTCCTGAAAACATTGTGGCATCACTCGGATGCGATCATGTGCTGCTCTCTTAAGGCATTGCCAGTGTTCACCTTTGCAAATCAGGCAGGGCTCGACATGCTCGAGACAACCTTAGTCGCGCTGCAAGACATAACTTTGGAAAAGATATTCGACGACCATGGAAAAAAGACACTCTGCTCAGAGTTCCCACAGATAATGCAACAGGGATTTGCTTGTCTTCAAGGAGGCATATGCCTATCGAGCATGGGCCGACCCATCTCGTATGAACGAGCTGTGGCTTGGAAGGTACTGAATGAAGAAGAAAATGCACACTGCATCTGCTTTATGTTTGTGAACTGGTCTTTTGTCTGA 2514 46.54 MAMSCKDGNKHAIDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLSAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTTLGAKDTSCEPVVTSGQHNLTSQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDQPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTMAALRQLRQIGHEVSQSNVTGWGRRPAALRALGQRLTRGFNEALNGFNDEGWSVMGNDGLDDVTILINSSPDKLMGLNISFANGFSSISNSVLCARASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPWSLPGSRVGSFGNQVILPLANTIEHEEFLEVIKLEGIGHTPEDAMMPREMFLLQLCSGMDENAFGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGPAGNKAPNDSANSGCARSVMTIAFEFACESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLARWISNSYRCYLGVELLKSGNEGGELVLKTLWHHSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGKKTLCSEFPQIMQQGFACLQGGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFVNWSFV 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11037224 11045230 - Sed0012296.1 Sed07g1429 720293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1429 837 ProSiteProfiles START domain profile. 151 366 IPR002913 GO:0008289(InterPro)
Sed07g1429 837 CDD homeodomain 17 77 IPR001356 GO:0003677(InterPro)
Sed07g1429 837 MobiDBLite consensus disorder prediction 128 154 - -
Sed07g1429 837 Gene3D - 195 373 IPR023393 -
Sed07g1429 837 SUPERFAMILY Bet v1-like 160 369 - -
Sed07g1429 837 CDD START_ArGLABRA2_like 155 370 - -
Sed07g1429 837 SMART HOX_1 14 80 IPR001356 GO:0003677(InterPro)
Sed07g1429 837 Gene3D - 9 83 - -
Sed07g1429 837 Pfam START domain 161 369 IPR002913 GO:0008289(InterPro)
Sed07g1429 837 Coils Coil 82 113 - -
Sed07g1429 837 CDD bZIP 69 108 - -
Sed07g1429 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 10 837 IPR044830 GO:0003700(InterPro)
Sed07g1429 837 SMART START_1 160 370 IPR002913 GO:0008289(InterPro)
Sed07g1429 837 MobiDBLite consensus disorder prediction 128 150 - -
Sed07g1429 837 Pfam Homeodomain 17 75 IPR001356 GO:0003677(InterPro)
Sed07g1429 837 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Sed07g1429 837 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677(InterPro)
Sed07g1429 837 Pfam MEKHLA domain 694 836 IPR013978 -
Sed07g1429 837 FunFam homeobox-leucine zipper protein ATHB-15 196 377 - -
Sed07g1429 837 SUPERFAMILY Homeodomain-like 17 78 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1429 Sed-Chr7:11037224 Sed09g1606 Sed-Chr9:39547367 0.00E+00 dispersed
Sed07g1429 Sed-Chr7:11037224 Sed09g1605 Sed-Chr9:39547367 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39083 PF01852 START 2.80E-54 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1429 K09338 - csv:101213106 1654.03