Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1470 ATGGATTTGTGGGCAGGGTTTGTGGGAAGCAGTTGGGGTAGAGAGTTCGTCGCGGGCGGGTTTGGCGGGATCGCCGGCATCGTCTCCGGCTACCCGCTTGACACTGTTCGAGTCAAGCAACAACAATCCAACATTTCTGGCTCTGCTTTCAAAATCTTTCGCAGTATGATTGCCAATCATGGCCCTGCTGGTTTTTACAGAGGCATGGCTGCTCCTCTTGCTTCGGTCACTTTCCAGAACGCCGCCTTGTTCCAGATCTACGCCATACTTTCCCGAGCATTCAACTCTGCTCGATCCAACGGCGACCCACCAAGCTACAAGGCAGTCACGTTCGGAGGATTCGGCACGGGAGCTCTTCATAGCTTCATCCTTTCACCGGTGGAGCTGGTGAAGATCCGCCTACAATTAACATCATCTTCACACAAAGGCCCTATAAGCCTGGCCAAAAACATCTACAAAACAGAAGGATTAAAAGGAATATACAGAGGATTCACAATAACAATGCTGAGAGATGCACCTGCATATGGCATCTATTTCTGGACGTACGAGTGCATGAGAGAGCAGTTTCATCCCGGCTGCCGAAAGACCGGCCGAGAGGGCGTCGGCACAATGCTGGTCTCGGGCGGCCTCGCCGGGGTTGCCAGCTGGGTTTTCTGCTATCCATGGGATGTGTTGAAGACCAGAATTCAGAGTTCTTGTTTGAAGTATAATGGCATTGTTGATTGTCTTAGGAAGAGTGTTGGAGAAGAGGGTTATAGAGTGCTGTGGCGTGGGCTGGGGACTACTGTTGCTAGAGCATTTGTGGTTAATGGTGCTACTTTTGGTGCTTATGAGATAAGTTTGAGGTGTTTGTTTAGCAATGAAACAAAATGA 873 49.94 MDLWAGFVGSSWGREFVAGGFGGIAGIVSGYPLDTVRVKQQQSNISGSAFKIFRSMIANHGPAGFYRGMAAPLASVTFQNAALFQIYAILSRAFNSARSNGDPPSYKAVTFGGFGTGALHSFILSPVELVKIRLQLTSSSHKGPISLAKNIYKTEGLKGIYRGFTITMLRDAPAYGIYFWTYECMREQFHPGCRKTGREGVGTMLVSGGLAGVASWVFCYPWDVLKTRIQSSCLKYNGIVDCLRKSVGEEGYRVLWRGLGTTVARAFVVNGATFGAYEISLRCLFSNETK 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11345258 11347927 - Sed0019488.1 Sed07g1470 720334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1470 290 Gene3D Mitochondrial carrier domain 14 290 IPR023395 -
Sed07g1470 290 ProSiteProfiles Solute carrier (Solcar) repeat profile. 199 283 IPR018108 -
Sed07g1470 290 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 93 IPR018108 -
Sed07g1470 290 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 284 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
Sed07g1470 290 SUPERFAMILY Mitochondrial carrier 12 278 IPR023395 -
Sed07g1470 290 Pfam Mitochondrial carrier protein 201 285 IPR018108 -
Sed07g1470 290 Pfam Mitochondrial carrier protein 11 95 IPR018108 -
Sed07g1470 290 Pfam Mitochondrial carrier protein 111 189 IPR018108 -
Sed07g1470 290 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 188 IPR018108 -
Sed07g1470 290 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085(InterPro)
Sed07g1470 290 PRINTS Mitochondrial carrier protein signature 161 179 IPR002067 GO:0055085(InterPro)
Sed07g1470 290 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085(InterPro)
Sed07g1470 290 PRINTS Mitochondrial carrier protein signature 208 230 IPR002067 GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1470 Sed-Chr7:11345258 Sed09g1567 Sed-Chr9:39287303 4.80E-100 dispersed
Sed06g2154 Sed-Chr6:45337744 Sed07g1470 Sed-Chr7:11345258 1.60E-109 wgd
Sed07g1470 Sed-Chr7:11345258 Sed09g1566 Sed-Chr9:39287092 5.00E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1470 K15109 - csv:101222165 458.373