Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1476 ATGGCTATGGCTCTTCGAAGATTTGCCTTTGGCATCAAGAAACCCAATGTTCTTTTTGTCAATGGCCAATTTCTCCATCACAAGGCTACCATGGAGCAAACGGAAAGGCCTCTAGCTCCCTGGGTTGAGCAGATGAACACCCCCATGAAGGATCTTGCTCCGGAAGTCTACGACATCATCGAGCTCGAGAAAGCTCATCAATGGAAGGGTCTTGAACTTATACCCTCGAAGAATTTCTGCTCAGCAGCAGTAATGGAAGCAGTTGGTTCAATTATGGGCAATACAATTACTGAAGGATATCCAGGCGCCAGATACTATGGGGGAACTCAGAATGTTGACGCCGCTGAAAACTTGTGCAAGAAATATGCCCTGGAAGCTTTCCGTTTGGACCCTGCAAAATGGGGAGTTAACGTGCAGCCTCTCTCTGGATCCGTGGCTAACATGGAGACATACACTGCATTATTAAAACCTCATGACAGGATCATGTCTCTTGATTTACCACATGGTGGACACCTTTCGCATGGTTATCAGACCGAAACCAAGAGGATTACAACTTCCTCAACATTCTATGAGGTAATGCCATATCGGTTGAATGAAAGCACTGGTTGTATCGACTATGATCAGTTGGAGAGTAGTGCATCGCTGTTTCGACCGAAACTCATTGTTGCTGGTGCAAGTGCCTATTCACGTCTCTATGATTACGCACGAATTCGAAAGATTTGTGATAAACAGAAGGCAATCCTACTGGCTGACATGGCACACATTGCTGGTTTAGTTGCAGCAGACATTATTCCATCTCCTTTTGAATATGCTGACATTGTAACAACAACAACAAAAAAAACGTTACGTGGTCCACGAGCGGCTATGATTTTCTTCCGGCTGGGCGTTAAAGAGATCAACAAAAAAGGACAGGAAGTGCTCTATGACTATGGAGAAAAAATTAATGCATCTGTCTTTCCAGGTCTTCAAGGTGCTCCAAACAACCAAACCATAACCGGTCTTATAATTGCACTAAAGCAGGCCAAAAGTCCGGAATTCAAAGCCTACCAAAAGCAGGTTCTCGGGAATTGTTCAAAATTTGCTCAGAGTTTGATGGAGAAGGGCTATGAACTTGTATCTGGTGGAACTGAGAATCATTTAGTTCTTGTGAATTTGAAAAATAAGGGTATTGATGGCGCAAGAGTGGAGAGGATTTTGGAATGGATTCAAATTAGAGTTAACAAGAACACAGTTCCAGGGGACTCGTCGGCCATGGTTCCTAGTGGTGTTCGTATGGGGACCCCTGCTATGACTACGAGAGGCTTACTCGAAGAAGATTTTGTGAAAGTTGCTGAATTCTTTGATGAAGCTGTGAACTTGGCCTTGAAGATTAAGGCTGCTGAACCCAAAGGTGCTAATAAGCTAAAGGATTTCGTGGCAACCATGCAATCAAATGAAGAATTCCAATCTGAAGTTTCAAAGCTGGGACATAAGGTCGTGGAGTTTGCCAAACAATTTCCAATCATAGGTTACAAGAAAGAGACAATGAAATACAAAGAATGA 1542 43.39 MAMALRRFAFGIKKPNVLFVNGQFLHHKATMEQTERPLAPWVEQMNTPMKDLAPEVYDIIELEKAHQWKGLELIPSKNFCSAAVMEAVGSIMGNTITEGYPGARYYGGTQNVDAAENLCKKYALEAFRLDPAKWGVNVQPLSGSVANMETYTALLKPHDRIMSLDLPHGGHLSHGYQTETKRITTSSTFYEVMPYRLNESTGCIDYDQLESSASLFRPKLIVAGASAYSRLYDYARIRKICDKQKAILLADMAHIAGLVAADIIPSPFEYADIVTTTTKKTLRGPRAAMIFFRLGVKEINKKGQEVLYDYGEKINASVFPGLQGAPNNQTITGLIIALKQAKSPEFKAYQKQVLGNCSKFAQSLMEKGYELVSGGTENHLVLVNLKNKGIDGARVERILEWIQIRVNKNTVPGDSSAMVPSGVRMGTPAMTTRGLLEEDFVKVAEFFDEAVNLALKIKAAEPKGANKLKDFVATMQSNEEFQSEVSKLGHKVVEFAKQFPIIGYKKETMKYKE 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11388757 11400608 - Sed0015171.2 Sed07g1476 720340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1476 513 Gene3D Aspartate Aminotransferase, domain 1 54 501 IPR015422 -
Sed07g1476 513 FunFam Serine hydroxymethyltransferase 78 295 - -
Sed07g1476 513 SUPERFAMILY PLP-dependent transferases 45 504 IPR015424 -
Sed07g1476 513 Hamap Serine hydroxymethyltransferase [glyA]. 48 503 IPR001085 GO:0004372(InterPro)|GO:0019264(InterPro)|GO:0030170(InterPro)|GO:0035999(InterPro)
Sed07g1476 513 Gene3D - 78 351 IPR015421 -
Sed07g1476 513 PIRSF SHMT 26 508 IPR001085 GO:0004372(InterPro)|GO:0019264(InterPro)|GO:0030170(InterPro)|GO:0035999(InterPro)
Sed07g1476 513 Pfam Serine hydroxymethyltransferase 50 446 IPR039429 -
Sed07g1476 513 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 32 506 IPR049943 GO:0004372(PANTHER)|GO:0005737(PANTHER)|GO:0006565(PANTHER)|GO:0006730(PANTHER)|GO:0008270(PANTHER)|GO:0019264(PANTHER)|GO:0030170(PANTHER)|GO:0046653(PANTHER)|GO:0046655(PANTHER)|GO:0050897(PANTHER)|GO:0070905(PANTHER)
Sed07g1476 513 CDD SHMT 50 475 IPR001085 GO:0004372(InterPro)|GO:0019264(InterPro)|GO:0030170(InterPro)|GO:0035999(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1476 K00600 - - csv:101222345 767.689
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1474 Sed-Chr7:11362115 Sed07g1476 Sed-Chr7:11388757 1.60E-241 dispersed
Sed07g1476 Sed-Chr7:11388757 Sed10g0801 Sed-Chr10:5777118 4.70E-207 dispersed
Sed07g1475 Sed-Chr7:11388757 Sed07g1476 Sed-Chr7:11388757 2.10E-295 tandem
Sed07g1476 Sed-Chr7:11388757 Sed07g1477 Sed-Chr7:11388757 2.30E-270 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g58 . . . . . . . . . . . . . . Sed07g1476 Cpe07g00154 . Bhi04g00909 Tan02g2503 . . Hepe10g0407 . Lcy13g1458 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00180 . . . . . . . . . . . Cla08g01180 Cam08g1645 Cec08g1219 Cco08g1340 Clacu08g1340 . Cre08g1126 . Csa02g02227 . .
Vvi18g553 Blo01g01790 . . . . . . . . . . . . . Sed07g1476 . . Bhi04g00909 Tan02g2503 . . Hepe10g0407 . Lcy13g1458 Cla08g01180 Cam08g1645 Cec08g1219 Cco08g1340 Clacu08g1340 . Cre08g1126 . . . . . . . Cme03g01782 . Blo18g00098 . . . . Bma01g01367 . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01041 Csa02g02227 Chy03g01290 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000166 7 6 6 5 4 5 6 5 6 7 6 6 9 6 5 10 6 8 7 6 5 5 6 5 5 6 5 19 9 4 195