Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1519 ATGAGAAAAGAAGAAAATCATGTCAGGGCTAATATTGGAGAATTCCCTGGTAGAATTACACGTGCCCGGGCTGCTGCATTTGGTGCATCAGCTCAGTTGCCTCCAAAAGTTCCTGCACGTCAACAGGAGAGACCGGTTGCACGAGCTAATCTGAAAAGAGCTGCTTCAGATGAAAATAGCTGCCATTCTATTGCTAATTCATCACGGCCGCTTAAGAGGAGGGTTGTGCTTCAGGATGTCAGCAATATATGTTGTGAACCTTCATACTCAAAATGTTTTGATGCAATTAAAATTCAGGCCAATAGTAGTAAGCCGACAATCAAAAACTGTCTCAAGAAGTCCAAAGGAACCTCATCAGTTGGTCTGGCTAGCTCCAAGGTTTCTCTTGATCGTAGAACCAAAGTAGCCTCATCAGTTGGTGTGGCTAAATCCAAGGTCCCTCTTGATCTTAGAACACAAGGAGGGCTAGAAAATGTCAAATCAAAAGCTAAGTTCAAAGTTGAACATTCAATGAATTCTAAAGACCGTGAGACGCATCAATGGGTAGGTGGTGGTATAAAGGAAGAGATCTCATGTAATCTTCAGGATGATAATGGGAGGCCTCAAAGTCCTTCGGAGTCTCAAAATTTTCAACATAAAGAGAAAGCGTTGCTTCTCGAGACAAGAAGCAAACTAGACATTACGGACATTGATTGTAATGACAGAGATGCCCAACTGTGCACCGTCTATGCCCATGATATCTACAACAATTTACGTGTTGCTGAGCTAACTAGAAGGCCACGTCCCAATTTCATGGAAACAGTGCAGACTGATATTACCCAAAGCATGCGGGCAATATTGGTTGATTGGATTGTGGAGGTATCAGAGGAATACAAGTTAGTACCAGACACACTCTATCTAACTGTATTTTTCATCGATTGGTTTCTCTCCCAAAAATACATCGAGAGACAAAAACTTCAACTGTTGGGAATCACTTGCATGTTAATTGCCTCGAAATATGAAGAAATTTGTGCCCCACGTGTTGAAGACTTTTGTTTCATCACTGACAGCACCTACACAAAAGAGGAGGTACTGAATATGGAAGGTCAAATATTGAAGCATATGGGCTTTCAACTTTCTGCACCAACTGCAAAATCTTTCCTCAGAAGATATGTTCGAGCTGCACAAACGACTTTTGAGACCCCTAATCTTGAACTCGAGTGCCTCGCCAACTATCTAGCGGAACTAACACTGGTAAACTACGGTTTCTTGAGGTTTCTTCCCTCGGTTATTGCTGCATCAGCTGTATTTCTTTCCAAATGGACGTTGGATCAGTCAAGTCACCCATGGAATTCAACACTGGAATATTATACCTCGTATAAAACATCAGATCTGAAACAAACTGTACTTGCTTTACAAGATTTGCAGTTGAACATCAATGGTTGTCCTCTCAGTTCGATTCGCGTCAAGTATCGACAAGAAAAGTTCAAAGCCGTCGCAACTTTGTCTTCTCCGAAATTGCTTGATACGCTATTCTGA 1518 41.83 MRKEENHVRANIGEFPGRITRARAAAFGASAQLPPKVPARQQERPVARANLKRAASDENSCHSIANSSRPLKRRVVLQDVSNICCEPSYSKCFDAIKIQANSSKPTIKNCLKKSKGTSSVGLASSKVSLDRRTKVASSVGVAKSKVPLDLRTQGGLENVKSKAKFKVEHSMNSKDRETHQWVGGGIKEEISCNLQDDNGRPQSPSESQNFQHKEKALLLETRSKLDITDIDCNDRDAQLCTVYAHDIYNNLRVAELTRRPRPNFMETVQTDITQSMRAILVDWIVEVSEEYKLVPDTLYLTVFFIDWFLSQKYIERQKLQLLGITCMLIASKYEEICAPRVEDFCFITDSTYTKEEVLNMEGQILKHMGFQLSAPTAKSFLRRYVRAAQTTFETPNLELECLANYLAELTLVNYGFLRFLPSVIAASAVFLSKWTLDQSSHPWNSTLEYYTSYKTSDLKQTVLALQDLQLNINGCPLSSIRVKYRQEKFKAVATLSSPKLLDTLF 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11915751 11922397 + Sed0010399.2 Sed07g1519 720383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1519 505 CDD CYCLIN_AtCycA_like_rpt1 236 371 - -
Sed07g1519 505 SUPERFAMILY Cyclin-like 236 372 IPR036915 -
Sed07g1519 505 CDD CYCLIN_AtCycA-like_rpt2 375 489 - -
Sed07g1519 505 FunFam Cyclin A1 362 494 - -
Sed07g1519 505 PANTHER CYCLINS 224 484 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed07g1519 505 Pfam Cyclin, N-terminal domain 246 373 IPR006671 -
Sed07g1519 505 Gene3D - 246 494 - -
Sed07g1519 505 Pfam Cyclin, C-terminal domain 375 497 IPR004367 -
Sed07g1519 505 Gene3D - 260 373 - -
Sed07g1519 505 SMART cyclin_7 282 366 IPR013763 -
Sed07g1519 505 SMART cyclin_7 379 467 IPR013763 -
Sed07g1519 505 SUPERFAMILY Cyclin-like 375 500 IPR036915 -
Sed07g1519 505 FunFam Mitotic cyclin 6 260 360 - -
Sed07g1519 505 PIRSF Cyclin_A_B_D_E 35 504 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed07g1519 505 SMART Cyclin_C_2 375 498 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1519 Sed-Chr7:11915751 Sed09g1531 Sed-Chr9:38921964 1.10E-229 dispersed
Sed07g1518 Sed-Chr7:11915751 Sed07g1519 Sed-Chr7:11915751 1.50E-277 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1519 K06627 - csv:101222299 818.535