Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1568 ATGGAAGAAATTGGTTGGTTCTCCAGTGTTTTTGTGCCTCCGGTCAAGTACACTGAGCATCGGACACAAACCAAGCATTTCTCTCCGTCTTTAATGGGGCCCAAGCTCGTCCGAGTCTCTGTAACGGACGCCGATGCCACTGATTCCTCCGGCGACGATGAAGAACAGCAACCACGGCAACGAGTGAAGAGGTTTATCAACGAGATTACAATTGGGGTTTCCGGGAGAAACAGGCGGAGGAAACCCACCGGCGGGAAGGTCAATTGCCGGAAGCTGGTTGCGCCGGGGGGGAGTAAGAAATTCCGCGGCGTCCGGCACCGCCCGTGGGGGAAATGGGCGGCCGAGATTAGAGATCCTTGGCGACGTGTGCGGGTGTGGTTAGGCACCTACGATACGGCCGAAGAAGCCGCTATGGTCTACGACAACGCTGCCATTCAACTCCGCGGCCCCGCCGCTCAAACCAATTTCAGTCCTCCGCCGCTCAAATCCTCGCCGGTGGCGAGCTCGAACGACAATGTCTCCGCCGCGGACTCCAACAACGAGAATGCCTCCTCGCCGACCTCCGTTCTCCGCTGCTCCTCACCGGCGACCCACGACGCCGTGTCGGAAAAAGTATTCCCTCCAACGACCACCGTCAAAGAAAATTTCCCCGGCGATGCGTTTTGCTCCGATGGTATCTTCAACGACGCCGTTTTGAGTGGCGACTACGGAAGTAGCATGTTTGTGAACCCGGCCGATGACTTCGAGTTCGGGCTAAACTTCGGGTTTGGATCCTCCACGTGGCATATGGTTGAAGACTCCTTCCTAGACATCGGCGACTTATTCGGGTCGGACCCTCTCGTTGCAGTTTGA 852 57.04 MEEIGWFSSVFVPPVKYTEHRTQTKHFSPSLMGPKLVRVSVTDADATDSSGDDEEQQPRQRVKRFINEITIGVSGRNRRRKPTGGKVNCRKLVAPGGSKKFRGVRHRPWGKWAAEIRDPWRRVRVWLGTYDTAEEAAMVYDNAAIQLRGPAAQTNFSPPPLKSSPVASSNDNVSAADSNNENASSPTSVLRCSSPATHDAVSEKVFPPTTTVKENFPGDAFCSDGIFNDAVLSGDYGSSMFVNPADDFEFGLNFGFGSSTWHMVEDSFLDIGDLFGSDPLVAV 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12484251 12485115 - Sed0022996.1 Sed07g1568 720432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1568 283 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 37 194 IPR050913 -
Sed07g1568 283 CDD AP2 99 156 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1568 283 Gene3D AP2/ERF domain 99 158 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1568 283 SMART rav1_2 100 163 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1568 283 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1568 283 FunFam Ethylene-responsive transcription factor 2 99 158 - -
Sed07g1568 283 SUPERFAMILY DNA-binding domain 100 157 IPR016177 GO:0003677(InterPro)
Sed07g1568 283 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1568 283 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1568 283 MobiDBLite consensus disorder prediction 154 193 - -
Sed07g1568 283 Pfam AP2 domain 100 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1568 Sed-Chr7:12484251 Sed13g0091 Sed-Chr13:591266 2.10E-47 dispersed
Sed03g2369 Sed-Chr3:19545696 Sed07g1568 Sed-Chr7:12484251 4.70E-17 transposed
Sed01g3830 Sed-Chr1:67478298 Sed07g1568 Sed-Chr7:12484251 2.10E-56 wgd
Sed13g0805 Sed-Chr13:5981464 Sed07g1568 Sed-Chr7:12484251 2.40E-80 wgd
Sed05g0731 Sed-Chr5:5498750 Sed07g1568 Sed-Chr7:12484251 5.50E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39096 PF00847 AP2 4.40E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1568 - - - 0.0