Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1580 ATGGGGATGAAGGCAACTTCAAACGGAGTTTTTCAAGGGGACAATCCTTTGAATTATGCCCTTCCTCTGGCCATCCTTCAGATTTGTCTTGTTGTTCTTCTCACTCGCCTTCTCACTCTCGCACTTCGACCTGTTCGACAACCTCGTGTTATTGCTGAGATCATCGGTGGCATCCTTCTGGGTCCATCGGCGCTTGGCCGGAACTTGGATTACTTACACACAATCTTTCCTGAAAAAAGTCTCACTGTTTTAGACACATTGGCCAATTTGGGTCTTCTCTTCTTCCTCTTTTTGGTGGGTCTGGAGTTGGACCTCACAGCCCTCCGCCGCACCGGAAAACAAGCCATAAGCATTGCCTTCGCCGGAATCACCTTCCCCTTCATCCTCGGCATCGGCGCCTCCTTCATTCTCCGATCCACCATCAACAAAGGCGTCAACGGAGCCGCCTTCCTCGTCTTCATGGGCGTCTCTCTCTCCATCACCGCCTTCCCTGTCCTCGCCCGAATTCTCGCCGAGCTCAAGCTCCTCACCACCGACGTCGGCCGTATGGCCATGTCCGCCGCCGCCGTCAACGACGTCGTCGCTTGGATCCTCCTCGCATTGGCCATTGCACTCTCCGGCACCAACAGCTCCCCTTTAGTCTCTCTCTGGGTTTTCCTCTCCGGCACCGGTTTCGTCGTGTTCTGTTCCTTCGCCCTCCCGCCGATGTTCAAATGGATGTCGCGACGCTGCGCCGAGGGCGAGCCGGTGAAGGAATTGTACATCTGTGCTACTTTGTCGCTCGTTTTGGCGGCTGGGTTCATGACGGATTTGATCGGAATCCATGCTCTGTTCGGCGCTTTCGTCGTCGGAGTTCTTGTTCCTCACGAAGGACCGTTTTCAGTTGCGTTGGTTGAGAAAGTGGAAGATCTCGTCTCCGGTCTGTTTCTTCCGTTGTATTTCGTGTCCAGTGGATTGAAAACAAACATCGCAACAATTCAAGGCGGCCAATCGTGGGCTCTTCTCGCATTAGTGATTTTCACGGCCTGTTTCGGGAAAATTGTCGGAACTATTTCTGTTTCCATGCTTTACAAAATCACATTCCGGGAATCATTAGCTTTGGGGGTTTTGATGAACACGAAAGGCCTCGTGGAGTTGATCGTTCTCAACATCGGAAAAGATAAAAAGGTTTTGAATGATCAAACATTTGCGATTCTGGTTCTAATGGCGGTATTCACAACGTTCCTCACAACCCCAATTGTGATAGCGGTTTACAAGCCGACGAAGAAACAGAGCACTTCCAATTACCGGAATCGAACTCTCGAGAAATCCGAACGTGATTCCCAGCTTCGGATTCTGGCTTGTTTCCATTCATTTGACAACATTCCGGCCACGATTAACTTGATCGAAGCCTCTCGAGGAATGGAAAAGAAAGAAGGGCTCTGTGTTTATGCTCTGCATCTAATGGAGCTAACAGAGAGATCCTCTGCTATTTTAATGGTTCACAAAGCTAGAAAGAACGGCCTCCCATTTTGGAACAAAACCCGATCCAACTCAAACCAGATCATCGTCGCCTTCGAAGCCTTCCGGCAACTCAGCCGCGTCTCGATTAGGCCGATGACCGCCATTTCTGCTCTGTCAAACATGCATGAAGATATCTGCAGCAGCGCCGAGGGCAAAAAAGCCACCGTTATAATCCTCCCATTTCACAAGCACCATAGATTGGACGGAACATTAGAAACCACAAGGTCCGATTACCGGTTAGTGAACAAGAAAGTTCTAGAACGATCCCCCTGCTCCGTCGGGATCCTAATCGACAGAGGACTCGGCGGTGGCTCACACGTCTGTGCGAGTAACGTCTCGTCCACTGTCACCGTGTTCTTCTTCGGTGGGCGGGACGACCGTGAAGCTCTTGCGTTCGGGAAGAGAATGGCAGAGCATCCCGGGATCAGCTTGCGGGTGATCCGGTTCAGCCCTACGACGGAATTCGCAGCGGAGTTCGTCTCGGTCGAGATTAACAAGGAGGACCCGACGAATTCAGCCGCGGACGATCTGGCATTGGAGTCGATTGATTATGAAGAGAGGAAGGTGAGCAAAGGGGCATACGCCATTGAAGCCATAAAGGAGTTCAGTAAGTGTAATTTGATTTTGGTCGGAAGGATGCCGGAAGGGGAAGTTGTGAGAAGTATGAATGTGAACGCCACCGGAGAAAGTTCGGAGCTTGGGCCGGTCGGCGGCGTGTTGGCGTCGTCGGAGTTTTCAACGACGGCGTCGGTGTTGGTGGTGCAGCAGTTTCACGGTCAGATTCCGATGCCCGGCGAATCCACTTCCAGAGGAGAGACCACAGAGGAAGATCGTTAA 2340 51.67 MGMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLTLALRPVRQPRVIAEIIGGILLGPSALGRNLDYLHTIFPEKSLTVLDTLANLGLLFFLFLVGLELDLTALRRTGKQAISIAFAGITFPFILGIGASFILRSTINKGVNGAAFLVFMGVSLSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVVAWILLALAIALSGTNSSPLVSLWVFLSGTGFVVFCSFALPPMFKWMSRRCAEGEPVKELYICATLSLVLAAGFMTDLIGIHALFGAFVVGVLVPHEGPFSVALVEKVEDLVSGLFLPLYFVSSGLKTNIATIQGGQSWALLALVIFTACFGKIVGTISVSMLYKITFRESLALGVLMNTKGLVELIVLNIGKDKKVLNDQTFAILVLMAVFTTFLTTPIVIAVYKPTKKQSTSNYRNRTLEKSERDSQLRILACFHSFDNIPATINLIEASRGMEKKEGLCVYALHLMELTERSSAILMVHKARKNGLPFWNKTRSNSNQIIVAFEAFRQLSRVSIRPMTAISALSNMHEDICSSAEGKKATVIILPFHKHHRLDGTLETTRSDYRLVNKKVLERSPCSVGILIDRGLGGGSHVCASNVSSTVTVFFFGGRDDREALAFGKRMAEHPGISLRVIRFSPTTEFAAEFVSVEINKEDPTNSAADDLALESIDYEERKVSKGAYAIEAIKEFSKCNLILVGRMPEGEVVRSMNVNATGESSELGPVGGVLASSEFSTTASVLVVQQFHGQIPMPGESTSRGETTEEDR 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12659718 12662882 + Sed0005990.1 Sed07g1580 720444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1580 779 Pfam Sodium/hydrogen exchanger family 32 413 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Sed07g1580 779 FunFam Cation/H(+) antiporter 15 23 425 - -
Sed07g1580 779 PANTHER CATION/H + ANTIPORTER 3 759 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Sed07g1580 779 Gene3D - 23 428 IPR038770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1580 Sed-Chr7:12659718 Sed13g0816 Sed-Chr13:6035580 2.60E-289 dispersed
Sed07g1579 Sed-Chr7:12630883 Sed07g1580 Sed-Chr7:12659718 0.00E+00 tandem
Sed07g1580 Sed-Chr7:12659718 Sed07g1581 Sed-Chr7:12694959 4.90E-14 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1580 K26731 - csv:101202937 1182.55