Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1608 ATGGATTACTTTGGTAATTCGTCCTCTAAATTTCCCCTTGAAAATCATCATCAGATTTTCAACAACAACAACCCAGATACAAGAGCAGATTTCGAGCAGCAGCAACAACAGCAAGAAATGGAATCAAGTTCCCTTTTTGTAGAGAAAGAGCACATGTTCGACAAAGTAGTGACTCCAAGTGATGTGGGAAAATTAAACCGCTTAGTCATCCCGAAACAGCACGCGGAAAAGTACTTCCCGCTCGATTCTTCATCGAACGAGAAGGGCCTTCTCTTGAACTTCGAGGACCGCGGCGGAAAATCGTGGCGGTTTCGTTACTCTTACTGGACCAGCAGCCAGAGCTATGTCATGACCAAAGGCTGGAGCCGCTTTGTTAAGGAGAAGCGACTAGATGCTGGTGATATTGTCTCCTTTCAAAGAGGGGTTGCTGATGTTGATAAAGATCGGTTTTTTATCGATTGGCGGCGCCGGCCACCGCATCCGGCGGTCGAGACAGCTATTAGTTTTCACCACCACCACCAACTCGGCGGCCAAATTCCTCACCATTTTCAGCTCCACCAGTGGAGTCCATTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCATCAGAATAATAGTACTAATCATAATAATATCAGCCTATTTCATAATAATAACCCCTATAATTATCATCACCATTATTCTAATCATCGTTCTATCGTCGCCACGGGTAGCGACGTTGGTGGCTCGTATGCTGGGTCGCCAGTTTTTTACCATCGAAGATCTGGCCCAGCATCGCCTTCTGAGGCGGTGCCAGGTTCTACAGGTGGAAGTGGTGGCGGAGAAATTGGGAAAAGTGGTGGTGCTGCTAAGACATTGAGGCTTTTTGGGGTCAACATGGAATGTGCGGTGTCTGATGAAGAGTGCGACTTAACAACCTCCACTACGACTACGTCACCCCGCTTCCATGTTTACAATGGAATGCCGATACCGATGTCAATGCCGACGTTGATGCAGATGCCGAATAGTAACAACATTCCGACAATGGAATTTTTCGATAAAGGGAAGTCGTCGATGTCGTCGTCCTTCGATTTTGGTACCTGA 1095 47.21 MDYFGNSSSKFPLENHHQIFNNNNPDTRADFEQQQQQQEMESSSLFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRGGKSWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVADVDKDRFFIDWRRRPPHPAVETAISFHHHHQLGGQIPHHFQLHQWSPLATPLSLHRDHVLHLHQNNSTNHNNISLFHNNNPYNYHHHYSNHRSIVATGSDVGGSYAGSPVFYHRRSGPASPSEAVPGSTGGSGGGEIGKSGGAAKTLRLFGVNMECAVSDEECDLTTSTTTTSPRFHVYNGMPIPMSMPTLMQMPNSNNIPTMEFFDKGKSSMSSSFDFGT 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13190640 13196576 - Sed0010219.1 Sed07g1608 720472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1608 364 MobiDBLite consensus disorder prediction 14 37 - -
Sed07g1608 364 SUPERFAMILY DNA-binding pseudobarrel domain 50 154 IPR015300 -
Sed07g1608 364 ProSiteProfiles B3 DNA-binding domain profile. 53 158 IPR003340 GO:0003677(InterPro)
Sed07g1608 364 Gene3D - 46 173 IPR015300 -
Sed07g1608 364 SMART B3_2 53 158 IPR003340 GO:0003677(InterPro)
Sed07g1608 364 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 22 297 IPR044800 GO:0003700(InterPro)
Sed07g1608 364 Pfam B3 DNA binding domain 53 157 IPR003340 GO:0003677(InterPro)
Sed07g1608 364 MobiDBLite consensus disorder prediction 258 282 - -
Sed07g1608 364 FunFam B3 domain-containing protein 46 167 - -
Sed07g1608 364 CDD B3_DNA 51 140 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1608 Sed-Chr7:13190640 Sed13g0861 Sed-Chr13:6369344 3.10E-128 dispersed
Sed04g2276 Sed-Chr4:36503785 Sed07g1608 Sed-Chr7:13190640 3.70E-45 transposed
Sed09g0569 Sed-Chr9:6384244 Sed07g1608 Sed-Chr7:13190640 1.70E-61 transposed
Sed13g0860 Sed-Chr13:6369344 Sed07g1608 Sed-Chr7:13190640 5.70E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39100 PF02362 B3 7.70E-29 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1608 K09287 - csv:101220139 402.905