Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1677 ATGGCCGGTTTTTTCCCACTAGGCGGCGGAAGAGGACACAATTTTCACGTTCCCACCACCACAACCGGCGGCGAGATTATCCATCCCACCGACGGGTTATTTTGGTACAAAAATTATGAGAGCTTTGAATTATGGCAGCAGCAACAAGAACAAGGGGGAGAAGGGTTTGGTTACTCCGGCGAGGAATCGCCGCCAAGGTCGTCGTTGGTGATGGTGAGATCCGGCAGAGGCGGCTGCGGAGGGCAAGTTATAAGCTGCCAAGATTGTGGAAATCAAGCCAAAAAAGATTGCCTTCACATGCGATGTAGAACTTGCTGCAAAAGCCGTGGCTTTGAATGTGAAACCCACGTCAAAAGCACTTGGATTCCGGTCTCCAAACGCCGTGAACGGCAGCCCCGTAACGGCGACAATAACCCCAAACGCCCCCGTGACAGCAACGCCGCCGCCTCTTCAGGGTTTGAAATGGGGAATTTGCCGGTGGAAGTGAGCTCAACGGCGGTGTTCCGGTGTGTACGGATGACAACGTTGGACGAAACAAGCGACCAATACGGTTACCAAACGGCCGTTAACATCGGCGGCCATATTTTCAAAGGGATTCTTTACGACCACGGCCCCGACCACCACCACCATCAACAACAACAACCACCCAACTCCGCCTCCCCCGACGGCGGCGCCCTCCTCTCGCCGCCCATCAGCGCTGCATTGCTTGATCCCCTTCCGCCGTACCCAACTCCTCTCACCACCTACACCGCCGCCGGTACGCAATTCTTCCTTCCCCCAACATCCTAA 789 55.39 MAGFFPLGGGRGHNFHVPTTTTGGEIIHPTDGLFWYKNYESFELWQQQQEQGGEGFGYSGEESPPRSSLVMVRSGRGGCGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFECETHVKSTWIPVSKRRERQPRNGDNNPKRPRDSNAAASSGFEMGNLPVEVSSTAVFRCVRMTTLDETSDQYGYQTAVNIGGHIFKGILYDHGPDHHHHQQQQPPNSASPDGGALLSPPISAALLDPLPPYPTPLTTYTAAGTQFFLPPTS 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14583241 14584750 - Sed0001986.1 Sed07g1677 720541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1677 262 MobiDBLite consensus disorder prediction 124 154 - -
Sed07g1677 262 MobiDBLite consensus disorder prediction 200 232 - -
Sed07g1677 262 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 256 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Sed07g1677 262 MobiDBLite consensus disorder prediction 124 140 - -
Sed07g1677 262 MobiDBLite consensus disorder prediction 50 70 - -
Sed07g1677 262 Pfam Domain of unknown function (DUF702) 84 206 - -
Sed07g1677 262 NCBIfam LRP1 C-terminal domain 158 205 IPR006511 -
Sed07g1677 262 NCBIfam putative zinc finger domain, LRP1 type 85 127 IPR006510 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1677 Sed-Chr7:14583241 Sed10g0971 Sed-Chr10:7959052 1.20E-54 dispersed
Sed14g1169 Sed-Chr14:21046792 Sed07g1677 Sed-Chr7:14583241 5.00E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39106 PF05142 DUF702 1.20E-51 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1677 K27807 - csv:101216097 329.331