Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1682 ATGGAATTCGTTGATGCGGCGGCTCTCAACTGTTTCCATAAGGGAATCTCCCTTCAATTAAGCCCTCAACCCCATCTCTCTTTTAATCCCCACATTCTTCTCTCTTCCGATGATTTCCCCGTTGACGAATTCCTTGATTTGCCCATCCACGATGATGATGATGATGAATTTGTTCACCAAACTGAAATCACCCACCCCCAAGATGATGCTGATGATGAAGACATCTCTGTTTCTGTTTCTGATTCTGTTTCCGGTCATCAACTTCGTCGGGACTCCATTGTTTCCGACCTTAACATTTCGGAGGCTGAAGTGGCCAACCTTGAATGGCTGTCCCATTTCGTTGAGGACTCTTTCTCCGCCGCTGCAGTCGACCAACCGGACAAAACCGGTTCCGTTTCCCCGCCGGAGCCCTGTTTCAAGTCCCATATTCCGGTCAAGGCACGAACCAAACGAACCAGAACCGTCCTTCGCGGCCGGGTTTGGTGTCTCTCTTCCCCGTCGTCGACCGATTCCTCCTCCAATTCCACGTCATCGTCGTCTTCCTCGCCGGAAATTTTGCTCTCGAAGAAAAAACGGAAGAGGAAGTTGGCGTCGGAAAAGGCGAGAATCGTGGCCGGCGGCCAGTCGCCACGGCGGTGCAGCCATTGCGGAGTGCAGAAAACCCCGCAGTGGAGAACGGGTCCGCTCGGGGCAAAAACGCTGTGCAACGCTTGCGGCGTGCGGTTCAAGTCGGGTCGGCTTCTACCCGAATACCGACCCGCCTGCAGTCCGAGCTTCTCCACCGAACTGCACTCCAACCACCACCGGAAAGTCCTCCAGATGCGCCGGGGAAAGGAAACCGCCGTATCGGCCGACTTATTCACCTCAGAAAGATAA 876 54.11 MEFVDAAALNCFHKGISLQLSPQPHLSFNPHILLSSDDFPVDEFLDLPIHDDDDDEFVHQTEITHPQDDADDEDISVSVSDSVSGHQLRRDSIVSDLNISEAEVANLEWLSHFVEDSFSAAAVDQPDKTGSVSPPEPCFKSHIPVKARTKRTRTVLRGRVWCLSSPSSTDSSSNSTSSSSSSPEILLSKKKRKRKLASEKARIVAGGQSPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPSFSTELHSNHHRKVLQMRRGKETAVSADLFTSER 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14904200 14905551 - Sed0005141.1 Sed07g1682 720546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1682 291 PIRSF Txn_fac_GATA_plant 14 289 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Sed07g1682 291 Gene3D - 206 280 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed07g1682 291 MobiDBLite consensus disorder prediction 164 185 - -
Sed07g1682 291 CDD ZnF_GATA 212 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g1682 291 SMART GATA_3 207 261 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g1682 291 Pfam GATA zinc finger 213 247 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g1682 291 FunFam GATA transcription factor 204 288 - -
Sed07g1682 291 MobiDBLite consensus disorder prediction 164 194 - -
Sed07g1682 291 MobiDBLite consensus disorder prediction 124 144 - -
Sed07g1682 291 ProSiteProfiles GATA-type zinc finger domain profile. 207 243 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g1682 291 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 269 - -
Sed07g1682 291 ProSitePatterns GATA-type zinc finger domain. 213 238 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g1682 291 PANTHER GATA TRANSCRIPTION FACTOR 66 279 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3550 Sed-Chr5:44066638 Sed07g1682 Sed-Chr7:14904200 9.20E-39 dispersed
Sed05g3551 Sed-Chr5:44066638 Sed07g1682 Sed-Chr7:14904200 9.20E-39 dispersed
Sed07g1682 Sed-Chr7:14904200 Sed09g1604 Sed-Chr9:39528717 3.90E-33 dispersed
Sed13g1005 Sed-Chr13:8027036 Sed07g1682 Sed-Chr7:14904200 3.50E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39108 PF00320 GATA 3.50E-16 CL0167 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1682 - - - 0.0