Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1682 ATGGAATTCGTTGATGCGGCGGCTCTCAACTGTTTCCATAAGGGAATCTCCCTTCAATTAAGCCCTCAACCCCATCTCTCTTTTAATCCCCACATTCTTCTCTCTTCCGATGATTTCCCCGTTGACGAATTCCTTGATTTGCCCATCCACGATGATGATGATGATGAATTTGTTCACCAAACTGAAATCACCCACCCCCAAGATGATGCTGATGATGAAGACATCTCTGTTTCTGTTTCTGATTCTGTTTCCGGTCATCAACTTCGTCGGGACTCCATTGTTTCCGACCTTAACATTTCGGAGGCTGAAGTGGCCAACCTTGAATGGCTGTCCCATTTCGTTGAGGACTCTTTCTCCGCCGCTGCAGTCGACCAACCGGACAAAACCGGTTCCGTTTCCCCGCCGGAGCCCTGTTTCAAGTCCCATATTCCGGTCAAGGCACGAACCAAACGAACCAGAACCGTCCTTCGCGGCCGGGTTTGGTGTCTCTCTTCCCCGTCGTCGACCGATTCCTCCTCCAATTCCACGTCATCGTCGTCTTCCTCGCCGGAAATTTTGCTCTCGAAGAAAAAACGGAAGAGGAAGTTGGCGTCGGAAAAGGCGAGAATCGTGGCCGGCGGCCAGTCGCCACGGCGGTGCAGCCATTGCGGAGTGCAGAAAACCCCGCAGTGGAGAACGGGTCCGCTCGGGGCAAAAACGCTGTGCAACGCTTGCGGCGTGCGGTTCAAGTCGGGTCGGCTTCTACCCGAATACCGACCCGCCTGCAGTCCGAGCTTCTCCACCGAACTGCACTCCAACCACCACCGGAAAGTCCTCCAGATGCGCCGGGGAAAGGAAACCGCCGTATCGGCCGACTTATTCACCTCAGAAAGATAA 876 54.11 MEFVDAAALNCFHKGISLQLSPQPHLSFNPHILLSSDDFPVDEFLDLPIHDDDDDEFVHQTEITHPQDDADDEDISVSVSDSVSGHQLRRDSIVSDLNISEAEVANLEWLSHFVEDSFSAAAVDQPDKTGSVSPPEPCFKSHIPVKARTKRTRTVLRGRVWCLSSPSSTDSSSNSTSSSSSSPEILLSKKKRKRKLASEKARIVAGGQSPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPSFSTELHSNHHRKVLQMRRGKETAVSADLFTSER 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14904200 14905551 - Sed0005141.1 Sed07g1682 720546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1682 291 PIRSF Txn_fac_GATA_plant 14 289 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Sed07g1682 291 Gene3D - 206 280 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed07g1682 291 MobiDBLite consensus disorder prediction 164 185 - -
Sed07g1682 291 CDD ZnF_GATA 212 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g1682 291 SMART GATA_3 207 261 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g1682 291 Pfam GATA zinc finger 213 247 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g1682 291 FunFam GATA transcription factor 204 288 - -
Sed07g1682 291 MobiDBLite consensus disorder prediction 164 194 - -
Sed07g1682 291 MobiDBLite consensus disorder prediction 124 144 - -
Sed07g1682 291 ProSiteProfiles GATA-type zinc finger domain profile. 207 243 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g1682 291 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 269 - -
Sed07g1682 291 ProSitePatterns GATA-type zinc finger domain. 213 238 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g1682 291 PANTHER GATA TRANSCRIPTION FACTOR 66 279 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1682 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3550 Sed-Chr5:44066638 Sed07g1682 Sed-Chr7:14904200 9.20E-39 dispersed
Sed05g3551 Sed-Chr5:44066638 Sed07g1682 Sed-Chr7:14904200 9.20E-39 dispersed
Sed07g1682 Sed-Chr7:14904200 Sed09g1604 Sed-Chr9:39528717 3.90E-33 dispersed
Sed13g1005 Sed-Chr13:8027036 Sed07g1682 Sed-Chr7:14904200 3.50E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g1471 . 71 348 C2C2-Gata Transcription Factor Family AT5G25830 53.9 1.2e-67 254.6
Sed12g0790 . 3 149 C2C2-Gata Transcription Factor Family AT3G06740 58.4 6.7e-37 151.4
Sed06g2170 . 96 263 C2C2-Gata Transcription Factor Family AT2G45050 51.3 2.2e-43 173.7
Sed07g1682 . 103 275 C2C2-Gata Transcription Factor Family AT4G36240 50.3 3.0e-39 159.8
Sed04g1664 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.8 2.3e-137 486.9
Sed01g4052 . 1 513 C2C2-Gata Transcription Factor Family AT4G17570 52.0 1.4e-129 461.1
Sed05g1020 . 1 234 C2C2-Gata Transcription Factor Family AT4G17570 61.3 2.2e-71 267.7
Sed05g1021 . 1 234 C2C2-Gata Transcription Factor Family AT4G17570 61.3 2.2e-71 267.7
Sed05g1020 . 1 232 C2C2-Gata Transcription Factor Family AT5G47140 52.7 3.5e-55 213.8
Sed05g1021 . 1 232 C2C2-Gata Transcription Factor Family AT5G47140 52.7 3.5e-55 213.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39108 PF00320 GATA 3.50E-16 CL0167 Sed TF