Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1685 ATGGAAGCCAATTTGGAGGAGCTGAGACAAAGCTTCAGAGATGGAAGAGCAAGGGGTTTTGAATGGAGGAAAACCCAGCTGGTTTCTTTGATTCAGTTCATCCATGACAAAGAAAACGCCATTTTTGAAGCTCTTCATCAAGATCTTGGAAAGCATCCTGTGGAAGTTTTTCGAGATGAGGTTGGAATTGTTCTGAAATCTGCAAATAATGCTTTGTGCTGTTTAAAGAAATGGATGGCCCCTAAAACGAAATATGTTCCATTACTGTTCTACCCAGCAAAAGGAGAAGTTTTGTCTGAACCATTTGGTTTGGTGCTTATAATTTCTTCTTGGAACTTTCCCCTTTCTTTGACATTGGATCCATTGATTGGAGCAATATCAGCAGGCAACACCGTGGTTCTAAAACCGTCAGAATATGCTCCGGCGTGCTCGTCTTTGCTTGCTGCAACACTCCCTCTTTACCTTGATGATAAATGCATCAAGGTTGTGGAGGGTGGAGCTGATGTTTGTGAACAACTTTTACAGCACAAGTGGGATAAGATCTTCTTCACCGGGAGTCCGAGGGTAGGGAGGGTTGTGATGTCTGCAGCTGCAAAGCATTTAACTCCTGTTACTTTAGAGCTTGGGGGAAAATGTCCAGCAATCTTTGATTACGCCTCTGTTCATTCCAATATGAAGGTAGCAGCCAAGAGAATCGTCGGAGGAAAATGGGGGCCTTGTTCCGGGCAGGCGTGCATCGGGATAGATTATGTGCTTGTGGAAGATAAATTTGCTTCAGAATTGATCGAGTCGTTAAAGCGAATAATGAAGAAGTTTTATGGCGAAAACCCGAAGAACTCGATTAGCTTAGCCCGAATTGTTAACGAGCAACATGTTGAAAGAATTAGCAATCTTCTTAAAGACCCCAAGGTTGCTGCTTCAATTGTTCATGGTGGTTCCACAGACAAACTAAAACTCTTCATTGAGCCAACAATATTGTTGAATCCTCCATTCGATGCCGATATCATGACCGAAGAAATCTTCGGTCCTCTGTTACCAATAATCACTTTGAACAAAATTGAAGAAAGCATTGAGTTCATCAACTCAAGACCAAAACCTCTAGCTTTATATGCCTTCACAGATGACGAAACTCTCAAGAAACGAATTCTATTCGAAACGTCATCGGGAAGTGTCACATTTAATGATACCATGGTTCAGTTCGTGTGCGATTCGCTACCATTCGGTGGTGTTGGTCAGAGCGGTTTTGGTAGTTACCATGGCAAGTATTCTTTTGATGCATTCAGCCATGAAAAAGCAGTGTTGCAGAGAAGCTATTTGCTAGAACTCGAGCCACGATATCCGCCATGGAACGATTTCAAGCTCAAGTTCATCAGATTGGCGTATCGGTTCGACTATTGTGGGCTGATACTGCTTCTTTTGGGGTTAAAAAAGTAG 1434 42.61 MEANLEELRQSFRDGRARGFEWRKTQLVSLIQFIHDKENAIFEALHQDLGKHPVEVFRDEVGIVLKSANNALCCLKKWMAPKTKYVPLLFYPAKGEVLSEPFGLVLIISSWNFPLSLTLDPLIGAISAGNTVVLKPSEYAPACSSLLAATLPLYLDDKCIKVVEGGADVCEQLLQHKWDKIFFTGSPRVGRVVMSAAAKHLTPVTLELGGKCPAIFDYASVHSNMKVAAKRIVGGKWGPCSGQACIGIDYVLVEDKFASELIESLKRIMKKFYGENPKNSISLARIVNEQHVERISNLLKDPKVAASIVHGGSTDKLKLFIEPTILLNPPFDADIMTEEIFGPLLPIITLNKIEESIEFINSRPKPLALYAFTDDETLKKRILFETSSGSVTFNDTMVQFVCDSLPFGGVGQSGFGSYHGKYSFDAFSHEKAVLQRSYLLELEPRYPPWNDFKLKFIRLAYRFDYCGLILLLLGLKK 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15029591 15032454 + Sed0008329.1 Sed07g1685 720549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1685 477 PANTHER ALDEHYDE DEHYDROGENASE 3 475 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(InterPro)|GO:0006081(PANTHER)
Sed07g1685 477 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 210 413 IPR016163 GO:0016620(InterPro)
Sed07g1685 477 FunFam Aldehyde dehydrogenase 210 413 - -
Sed07g1685 477 Pfam Aldehyde dehydrogenase family 9 433 IPR015590 GO:0016491(InterPro)
Sed07g1685 477 PIRSF ALDH 1 470 IPR012394 GO:0006081(InterPro)
Sed07g1685 477 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 9 431 IPR016162 GO:0016491(InterPro)
Sed07g1685 477 FunFam Aldehyde dehydrogenase 9 219 - -
Sed07g1685 477 SUPERFAMILY ALDH-like 2 449 IPR016161 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1685 K00128 - - csv:101221321 827.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1143 Sed-Chr5:11860219 Sed07g1685 Sed-Chr7:15029591 7.00E-109 dispersed
Sed06g1004 Sed-Chr6:14802316 Sed07g1685 Sed-Chr7:15029591 1.10E-133 dispersed
Sed07g1685 Sed-Chr7:15029591 Sed12g1865 Sed-Chr12:29840797 1.90E-32 dispersed
Sed07g1685 Sed-Chr7:15029591 Sed05g1142 Sed-Chr5:11860219 1.30E-158 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g1865 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G24503 72.8 9.3e-216 747.3
Sed08g0748 . 1 490 Aldehyde Dehydrogenase Gene Family AT3G24503 72.0 5.8e-210 728.0
Sed03g2695 . 48 532 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 7.7e-162 568.2
Sed12g1882 . 58 542 Aldehyde Dehydrogenase Gene Family AT3G24503 55.3 5.7e-157 552.0
Sed12g1882 . 1 542 Aldehyde Dehydrogenase Gene Family AT3G48000 80.3 6.8e-257 884.0
Sed03g2695 . 1 532 Aldehyde Dehydrogenase Gene Family AT3G48000 76.7 1.6e-250 862.8
Sed12g1865 . 10 503 Aldehyde Dehydrogenase Gene Family AT3G48000 54.7 3.7e-162 569.3
Sed08g0748 . 17 490 Aldehyde Dehydrogenase Gene Family AT3G48000 54.4 2.0e-155 547.0
Sed03g2695 . 1 382 Aldehyde Dehydrogenase Gene Family AT1G23800 76.6 3.3e-171 599.0
Sed12g1882 . 1 386 Aldehyde Dehydrogenase Gene Family AT1G23800 73.3 1.3e-164 577.0
Sed12g1865 . 11 347 Aldehyde Dehydrogenase Gene Family AT1G23800 54.9 7.0e-105 378.6
Sed08g0748 . 17 358 Aldehyde Dehydrogenase Gene Family AT1G23800 54.2 7.0e-105 378.6
Sed06g1004 . 2 486 Aldehyde Dehydrogenase Gene Family AT4G34240 63.4 3.8e-183 639.0
Sed05g2367 . 16 487 Aldehyde Dehydrogenase Gene Family AT4G34240 66.3 8.4e-183 637.9
Sed05g2368 . 16 335 Aldehyde Dehydrogenase Gene Family AT4G34240 65.6 8.6e-119 425.2
Sed05g2367 . 77 487 Aldehyde Dehydrogenase Gene Family AT1G44170 72.7 2.9e-178 622.5
Sed06g1004 . 74 484 Aldehyde Dehydrogenase Gene Family AT1G44170 70.8 8.7e-175 610.9
Sed01g3300 . 68 482 Aldehyde Dehydrogenase Gene Family AT1G44170 51.1 2.6e-118 423.3
Sed07g1685 . 61 475 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 1.1e-116 417.9
Sed05g2368 . 77 334 Aldehyde Dehydrogenase Gene Family AT1G44170 74.0 1.2e-110 397.9
Sed01g3301 . 68 355 Aldehyde Dehydrogenase Gene Family AT1G44170 52.1 4.3e-81 299.7
Sed07g1685 . 1 477 Aldehyde Dehydrogenase Gene Family AT4G36250 63.3 6.3e-185 644.8
Sed05g1142 . 2 478 Aldehyde Dehydrogenase Gene Family AT4G36250 56.0 5.0e-158 555.4
Sed01g3300 . 12 483 Aldehyde Dehydrogenase Gene Family AT4G36250 55.3 1.9e-157 553.5
Sed05g1143 . 2 353 Aldehyde Dehydrogenase Gene Family AT4G36250 54.5 3.5e-111 399.8
Sed01g3301 . 12 357 Aldehyde Dehydrogenase Gene Family AT4G36250 53.5 1.1e-109 394.8
Sed05g3313 . 37 539 Aldehyde Dehydrogenase Gene Family AT1G79440 76.7 2.3e-233 805.8
Sed06g0796 . 10 502 Aldehyde Dehydrogenase Gene Family AT2G14170 80.8 7.6e-233 804.3
Sed10g0810 . 210 644 Aldehyde Dehydrogenase Gene Family AT2G14170 66.7 2.7e-174 609.8
Sed10g0811 . 210 644 Aldehyde Dehydrogenase Gene Family AT2G14170 66.7 2.7e-174 609.8
Sed10g0812 . 210 644 Aldehyde Dehydrogenase Gene Family AT2G14170 66.7 2.7e-174 609.8
Sed08g0168 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.4 2.0e-250 862.4
Sed12g1906 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 79.6 2.9e-246 848.6
Sed08g0169 . 1 474 Aldehyde Dehydrogenase Gene Family AT1G74920 80.6 3.0e-235 812.0
Sed08g0168 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.7 6.4e-257 884.0
Sed12g1906 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 5.0e-254 874.4
Sed08g0169 . 1 474 Aldehyde Dehydrogenase Gene Family AT3G48170 81.4 4.6e-239 824.7
Sed08g1569 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.2 2.6e-266 915.2
Sed08g1568 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 90.3 3.4e-266 914.8
Sed11g0187 . 1 438 Aldehyde Dehydrogenase Gene Family AT2G24270 89.5 4.4e-234 808.1
Sed01g1829 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 78.6 6.0e-256 880.9
Sed08g2577 . 17 180 Aldehyde Dehydrogenase Gene Family AT5G62530 74.5 3.0e-66 250.8
Sed08g2576 . 17 180 Aldehyde Dehydrogenase Gene Family AT5G62530 74.5 3.0e-66 250.8
Sed08g2578 . 17 153 Aldehyde Dehydrogenase Gene Family AT5G62530 74.6 4.1e-55 213.8
Sed04g3105 . 1 589 Aldehyde Dehydrogenase Gene Family AT3G66658 75.2 6.8e-274 940.6
Sed04g3106 . 1 516 Aldehyde Dehydrogenase Gene Family AT3G66658 75.0 1.9e-239 826.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011639 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30