Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1686 ATGAACCACCAAGTAACTGAAGATCAGCAACAAGCAGTACAAATCTCTCAGTTGTACACTGGATTATACATCCAAATGGTACCCCAACAAGGTAATTTGGGTGAGGGAAAGGCGAGACGACGTCGTAAGAAGAACAAAGGATCGGAAGCGGAGGCGGCAGCGAAGAAGCGGAAGCTGACAGAGGAGCAAGTTCATCTTTTGGAGACAAATTTTGGGAGTGAACACAAGTTGGAGTCGGAGAGAAAGGACCGTTTGGCGTCGGAGTTGGGGCTGGATCCCCGGCAGGTGGCCGTTTGGTTTCAGAACCGCCGTGCGCGGTGGAAGAACAAGAAACTTGAGGAGGAATATTGTAACCTAAAGAAGATTCATGAATCCGTTGTCGTTGAAAAATGTCGTCTTGAAAATGAGATATTGAAGCTAAAAGAACAACTTTCAGAGGTGGTAAAAGAAAAGGAGAGGCTGATAATGGGAGAACGGGCCGATGGGCCTCTAAGCAGCAGCTCAAGCCCATTAGAGCCCACATGCCTTGGGGAATTTGGAGCAATATTTGAAGATGTGTTTTATTACATGCCAGAAGACTCTTGCATTTATGACATGGAATGGCCAAATCCCTACATTTAA 621 46.22 MNHQVTEDQQQAVQISQLYTGLYIQMVPQQGNLGEGKARRRRKKNKGSEAEAAAKKRKLTEEQVHLLETNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYCNLKKIHESVVVEKCRLENEILKLKEQLSEVVKEKERLIMGERADGPLSSSSSPLEPTCLGEFGAIFEDVFYYMPEDSCIYDMEWPNPYI 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15100056 15102957 + Sed0020162.1 Sed07g1686 720550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1686 206 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677(InterPro)
Sed07g1686 206 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677(InterPro)
Sed07g1686 206 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 39 152 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Sed07g1686 206 Coils Coil 50 70 - -
Sed07g1686 206 SUPERFAMILY Homeodomain-like 55 116 IPR009057 -
Sed07g1686 206 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed07g1686 206 Pfam Homeodomain 56 109 IPR001356 GO:0003677(InterPro)
Sed07g1686 206 FunFam homeobox-leucine zipper protein ATHB-40 49 118 - -
Sed07g1686 206 Gene3D - 46 117 - -
Sed07g1686 206 MobiDBLite consensus disorder prediction 33 57 - -
Sed07g1686 206 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677(InterPro)
Sed07g1686 206 CDD homeodomain 55 111 IPR001356 GO:0003677(InterPro)
Sed07g1686 206 SMART HOX_1 53 114 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1686 Sed-Chr7:15100056 Sed10g0904 Sed-Chr10:6986567 6.20E-41 dispersed
Sed13g1002 Sed-Chr13:7917387 Sed07g1686 Sed-Chr7:15100056 8.20E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39109 PF00046 Homeodomain 2.00E-17 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1686 K09338 - csv:101221080 293.893