Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1690 ATGCCAATGGATTTCGCAAATTCCCCCACCGCTTCCGGCGAAGCCAGTTTCTCCTCCACCGGAACCCACCCTTCGCCGCCCAAATCCGCAGTCAAGAAGAAGCGCAACCTGCCCGGAATGCCAGATCCGGATGCAGAGGTAATTGCTCTGTCTCCGAATACCCTTTTGGCCACAAATCGATTCGTTTGCGAAATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTTCACCGGCGAGGGCACAATCTCCCATGGAAGCTCCGGCAACGGGCGAGCAAAGAGGTGGTGAAGAAAGTCTATGTCTGCCCGGAGCCGTCGTGCGTCCACCACCTTCCGGCGAGAGCCCTCGGCGACCTCACCGGAATTAAGAAGCATTTCTGCCGGAAACACGGCGAGAAGAAGTGGAAGTGCGGTAAGTGCTCTAAGAAATACGCCGTCAAGTCCGATTGGAAAGCCCATTCCAAGATTTGTGGCACCAAGGAGTACAAATGTGATTGCGAGACTGTGTTTTCCAGAAGAGATAGTTTTATGACTCACAGAGCTTTCTGTGATGCGTTGACGAAGGAGGTTGCTGGGATTCAGTCTCCGGCGGCGGCGGTGGCGGTGGCGGCGGATCCTCAAGCTCCGCCGCATACGGCTGCTTCTCCTTCCGCCGCCGCCCCTGTAGTCCCTCCATCAAATGACGAGATATCATCAATCTCGTTCATTCAGAATAAAGACATGGAGTTGCTTGAACATCCTACGCCGCCGCTGGGAGAAGCACCCGGCAGTTCCGGCAGCACCACCACCACCACACTGAGCAGCAGCAACGCCACCGTATTGGCCAGCTTGTTTGCTTCATCCGCCGCATCACTGAGCTTACAGCCGTCCCAGCAACTGGCCTTCCGCGACTTATTACGAGCAGTGACGCAGCCCGATCGGCCAGCCCAAGTTGCACAACCATTGGTTATTGAACCACTTTCTCTATGCCTATCGACCCACGCCAGATCGTCCCTTTTCGGAGCCGGCATTCAAGACCACCGCTCATATGTGCAGCCGACGCCGGCGGCCTTGTCTGCCACCGGGCTGCTGCAGAAGGCCGCTCAAATTGGTGCGGCGGCGGCGAGCACATCCGTGTTTCGTGGGCTTGGTTTATCATCTACCTCTTCTTCTGCACAACAGGGGAGTTTGTAA 1179 55.81 MPMDFANSPTASGEASFSSTGTHPSPPKSAVKKKRNLPGMPDPDAEVIALSPNTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRASKEVVKKVYVCPEPSCVHHLPARALGDLTGIKKHFCRKHGEKKWKCGKCSKKYAVKSDWKAHSKICGTKEYKCDCETVFSRRDSFMTHRAFCDALTKEVAGIQSPAAAVAVAADPQAPPHTAASPSAAAPVVPPSNDEISSISFIQNKDMELLEHPTPPLGEAPGSSGSTTTTTLSSSNATVLASLFASSAASLSLQPSQQLAFRDLLRAVTQPDRPAQVAQPLVIEPLSLCLSTHARSSLFGAGIQDHRSYVQPTPAALSATGLLQKAAQIGAAAASTSVFRGLGLSSTSSSAQQGSL 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15208185 15211851 - Sed0007155.1 Sed07g1690 720554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1690 392 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Sed07g1690 392 Gene3D Classic Zinc Finger 61 106 - -
Sed07g1690 392 MobiDBLite consensus disorder prediction 1 44 - -
Sed07g1690 392 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 198 - -
Sed07g1690 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Sed07g1690 392 MobiDBLite consensus disorder prediction 247 267 - -
Sed07g1690 392 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Sed07g1690 392 Gene3D Classic Zinc Finger 116 193 - -
Sed07g1690 392 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Sed07g1690 392 SMART c2h2final6 61 83 IPR013087 -
Sed07g1690 392 SMART c2h2final6 102 132 IPR013087 -
Sed07g1690 392 SMART c2h2final6 137 157 IPR013087 -
Sed07g1690 392 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 99 132 - -
Sed07g1690 392 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 381 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed07g1690 392 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Sed07g1690 392 MobiDBLite consensus disorder prediction 9 26 - -
Sed07g1690 392 FunFam protein indeterminate-domain 12-like 40 108 - -
Sed07g1690 392 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1690 Sed-Chr7:15208185 Sed07g1692 Sed-Chr7:15208185 9.10E-211 dispersed
Sed07g1690 Sed-Chr7:15208185 Sed07g1691 Sed-Chr7:15208185 4.30E-192 tandem
Sed13g0998 Sed-Chr13:7833345 Sed07g1690 Sed-Chr7:15208185 9.10E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39111 PF00096 zf-C2H2 0.0037 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1690 K25869 - csv:101215476 475.707