Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1691 ATGATTTTTGTCGACACAGATCCGGATGCAGAGGTAATTGCTCTGTCTCCGAATACCCTTTTGGCCACAAATCGATTCGTTTGCGAAATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTTCACCGGCGAGGGCACAATCTCCCATGGAAGCTCCGGCAACGGGCGAGCAAAGAGGTGGTGAAGAAAGTCTATGTCTGCCCGGAGCCGTCGTGCGTCCACCACCTTCCGGCGAGAGCCCTCGGCGACCTCACCGGAATTAAGAAGCATTTCTGCCGGAAACACGGCGAGAAGAAGTGGAAGTGCGGTAAGTGCTCTAAGAAATACGCCGTCAAGTCCGATTGGAAAGCCCATTCCAAGATTTGTGGCACCAAGGAGTACAAATGTGATTGCGAGACTGTGTTTTCCAGAAGAGATAGTTTTATGACTCACAGAGCTTTCTGTGATGCGTTGACGAAGGAGGTTGCTGGGATTCAGTCTCCGGCGGCGGCGGTGGCGGTGGCGGCGGATCCTCAAGCTCCGCCGCATACGGCTGCTTCTCCTTCCGCCGCCGCCCCTGTAGTCCCTCCATCAAATGACGAGATATCATCAATCTCGTTCATTCAGAATAAAGACATGGAGTTGCTTGAACATCCTACGCCGCCGCTGGGAGAAGCACCCGGCAGTTCCGGCAGCACCACCACCACCACACTGAGCAGCAGCAACGCCACCGTATTGGCCAGCTTGTTTGCTTCATCCGCCGCATCACTGAGCTTACAGCCGTCCCAGCAACTGGCCTTCCGCGACTTATTACGAGCAGTGACGCAGCCCGATCGGCCAGCCCAAGTTGCACAACCATTGGTTATTGAACCACTTTCTCTATGCCTATCGACCCACGCCAGATCGTCCCTTTTCGGAGCCGGCATTCAAGACCACCGCTCATATGTGCAGCCGACGCCGGCGGCCTTGTCTGCCACCGGGCTGCTGCAGAAGGCCGCTCAAATTGGTGCGGCGGCGGCGAGCACATCCGTGTTTCGTGGGCTTGGTTTATCATCTACCTCTTCTTCTGCACAACAGGGGAGTTTGTAA 1074 55.03 MIFVDTDPDAEVIALSPNTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRASKEVVKKVYVCPEPSCVHHLPARALGDLTGIKKHFCRKHGEKKWKCGKCSKKYAVKSDWKAHSKICGTKEYKCDCETVFSRRDSFMTHRAFCDALTKEVAGIQSPAAAVAVAADPQAPPHTAASPSAAAPVVPPSNDEISSISFIQNKDMELLEHPTPPLGEAPGSSGSTTTTTLSSSNATVLASLFASSAASLSLQPSQQLAFRDLLRAVTQPDRPAQVAQPLVIEPLSLCLSTHARSSLFGAGIQDHRSYVQPTPAALSATGLLQKAAQIGAAAASTSVFRGLGLSSTSSSAQQGSL 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15208185 15211851 - Sed0007155.2 Sed07g1691 720555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1691 357 Pfam Zinc finger, C2H2 type 26 48 IPR013087 -
Sed07g1691 357 SMART c2h2final6 102 122 IPR013087 -
Sed07g1691 357 SMART c2h2final6 67 97 IPR013087 -
Sed07g1691 357 SMART c2h2final6 26 48 IPR013087 -
Sed07g1691 357 FunFam protein indeterminate-domain 12-like 5 73 - -
Sed07g1691 357 Gene3D Classic Zinc Finger 26 71 - -
Sed07g1691 357 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 101 125 - -
Sed07g1691 357 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 64 97 - -
Sed07g1691 357 Gene3D Classic Zinc Finger 81 158 - -
Sed07g1691 357 SUPERFAMILY beta-beta-alpha zinc fingers 25 122 IPR036236 -
Sed07g1691 357 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Sed07g1691 357 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 6 346 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed07g1691 357 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 128 163 - -
Sed07g1691 357 MobiDBLite consensus disorder prediction 212 232 - -
Sed07g1691 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 48 IPR013087 -
Sed07g1691 357 FunFam protein indeterminate-domain 5, chloroplastic-like 80 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1691 Sed-Chr7:15208185 Sed13g0998 Sed-Chr13:7833345 2.10E-137 dispersed
Sed07g1690 Sed-Chr7:15208185 Sed07g1691 Sed-Chr7:15208185 4.30E-192 tandem
Sed07g1691 Sed-Chr7:15208185 Sed07g1692 Sed-Chr7:15208185 2.90E-187 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39112 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1691 K25869 - csv:101215476 441.425