Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g1692 | ATGCCAATGGATTTCGCAAATTCCCCCACCGCTTCCGGCGAAGCCAGTTTCTCCTCCACCGGAACCCACCCTTCGCCGCCCAAATCCGCAGTCAAGAAGAAGCGCAACCTGCCCGGAATGCCAGATCCGGATGCAGAGGTAATTGCTCTGTCTCCGAATACCCTTTTGGCCACAAATCGATTCGTTTGCGAAATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTTCACCGGCGAGGGCACAATCTCCCATGGAAGCTCCGGCAACGGGCGAGCAAAGAGGTGGTGAAGAAAGTCTATGTCTGCCCGGAGCCGTCGTGCGTCCACCACCTTCCGGCGAGAGCCCTCGGCGACCTCACCGGAATTAAGAAGCATTTCTGCCGGAAACACGGCGAGAAGAAGTGGAAGTGCGGTAAGTGCTCTAAGAAATACGCCGTCAAGTCCGATTGGAAAGCCCATTCCAAGATTTGTGGCACCAAGGAGTACAAATGTGATTGCGAGACTGTGTTTTCCAGGTCCGATTTTGAAATTGGTTTGTGGGTTTTGTTTGTTTGGTCTCGTTTTCTAATGGGTATTCGAATTTTATTTGGGATTGTTTTTTGTTCTTTTTGTAGAAGAGATAGTTTTATGACTCACAGAGCTTTCTGTGATGCGTTGACGAAGGAGGTTGCTGGGATTCAGTCTCCGGCGGCGGCGGTGGCGGTGGCGGCGGATCCTCAAGCTCCGCCGCATACGGCTGCTTCTCCTTCCGCCGCCGCCCCTGTAGTCCCTCCATCAAATGACGAGATATCATCAATCTCGTTCATTCAGAATAAAGACATGGAGTTGCTTGAACATCCTACGCCGCCGCTGGGAGAAGCACCCGGCAGTTCCGGCAGCACCACCACCACCACACTGAGCAGCAGCAACGCCACCGTATTGGCCAGCTTGTTTGCTTCATCCGCCGCATCACTGAGCTTACAGCCGTCCCAGCAACTGGCCTTCCGCGACTTATTACGAGCAGTGACGCAGCCCGATCGGCCAGCCCAAGTTGCACAACCATTGGTTATTGAACCACTTTCTCTATGCCTATCGACCCACGCCAGATCGTCCCTTTTCGGAGCCGGCATTCAAGACCACCGCTCATATGTGCAGCCGACGCCGGCGGCCTTGTCTGCCACCGGGCTGCTGCAGAAGGCCGCTCAAATTGGTGCGGCGGCGGCGAGCACATCCGTGTTTCGTGGGCTTGGTTTATCATCTACCTCTTCTTCTGCACAACAGGGGAGTTTGTAA | 1278 | 53.99 | MPMDFANSPTASGEASFSSTGTHPSPPKSAVKKKRNLPGMPDPDAEVIALSPNTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRASKEVVKKVYVCPEPSCVHHLPARALGDLTGIKKHFCRKHGEKKWKCGKCSKKYAVKSDWKAHSKICGTKEYKCDCETVFSRSDFEIGLWVLFVWSRFLMGIRILFGIVFCSFCRRDSFMTHRAFCDALTKEVAGIQSPAAAVAVAADPQAPPHTAASPSAAAPVVPPSNDEISSISFIQNKDMELLEHPTPPLGEAPGSSGSTTTTTLSSSNATVLASLFASSAASLSLQPSQQLAFRDLLRAVTQPDRPAQVAQPLVIEPLSLCLSTHARSSLFGAGIQDHRSYVQPTPAALSATGLLQKAAQIGAAAASTSVFRGLGLSSTSSSAQQGSL | 425 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 15208185 | 15211851 | - | Sed0007155.3 | Sed07g1692 | 720556 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g1692 | 425 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - | |
Sed07g1692 | 425 | SUPERFAMILY | beta-beta-alpha zinc fingers | 60 | 157 | IPR036236 | - | |
Sed07g1692 | 425 | Gene3D | Classic Zinc Finger | 58 | 159 | - | - | |
Sed07g1692 | 425 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 205 | 231 | - | - | |
Sed07g1692 | 425 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Sed07g1692 | 425 | FunFam | protein indeterminate-domain 12-like | 40 | 108 | - | - | |
Sed07g1692 | 425 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 83 | IPR013087 | - | |
Sed07g1692 | 425 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 136 | 160 | - | - | |
Sed07g1692 | 425 | SMART | c2h2final6 | 61 | 83 | IPR013087 | - | |
Sed07g1692 | 425 | SMART | c2h2final6 | 137 | 157 | IPR013087 | - | |
Sed07g1692 | 425 | SMART | c2h2final6 | 102 | 132 | IPR013087 | - | |
Sed07g1692 | 425 | MobiDBLite | consensus disorder prediction | 280 | 300 | - | - | |
Sed07g1692 | 425 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 18 | 414 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed07g1692 | 425 | MobiDBLite | consensus disorder prediction | 9 | 26 | - | - | |
Sed07g1692 | 425 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 99 | 132 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g1690 | Sed-Chr7:15208185 | Sed07g1692 | Sed-Chr7:15208185 | 9.10E-211 | dispersed | |
Sed07g1692 | Sed-Chr7:15208185 | Sed13g0998 | Sed-Chr13:7833345 | 9.80E-142 | dispersed | |
Sed07g1691 | Sed-Chr7:15208185 | Sed07g1692 | Sed-Chr7:15208185 | 2.90E-187 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39113 | None | None | None | None | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g1692 | K25869 | - | csv:101215476 | 458.759 |