Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1707 ATGAGCGGTAGCAACCGAAACTCCGCCGCCGGAAACATCAGCCCCGTCGGCAGCCCAGAGAGCTCAACGACGAAAGAACAAGACCGGTTCCTCCCGATCGCCAACGTGAGCCGAATCATGAAGAAATCCCTTCCGGCGAACGCGAAGATCTCGAAAGAGGCGAAAGAAACGGTGCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGAGGGAGAAGCGGAAAACGATCAACGGCGACGATCTGCTCTGGGCCATGACCACTCTCGGATTCGAAAATTACGTCCCCCCTTTGAAGATTTACCTCAACAAATACAGAGAAACAGAGGAGGACAAGCATTCTTTCGCCAGAAACGACGATCCGCCACCGCCGCCGCCCAAATCCGCCGATTCCGTGCTGGATTTTCAGAATTTGAATTCTGGGTTTTATTCATTTGGGAATCATATTCATGATCAGGCAAATCATAAGAGTTTTCATGTAATCGATGGCGTTGGATTTGGGGAAACTGAAGGGAATCGAGCTCGATCTATGGCGGCTCATCTTCAACAGAGCACTGGTTGGTGA 588 51.87 MSGSNRNSAAGNISPVGSPESSTTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVPPLKIYLNKYRETEEDKHSFARNDDPPPPPPKSADSVLDFQNLNSGFYSFGNHIHDQANHKSFHVIDGVGFGETEGNRARSMAAHLQQSTGW 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15719286 15720600 - Sed0011663.1 Sed07g1707 720571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1707 195 FunFam Nuclear transcription factor Y subunit B-3 19 139 - -
Sed07g1707 195 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Sed07g1707 195 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Sed07g1707 195 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Sed07g1707 195 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Sed07g1707 195 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g1707 195 MobiDBLite consensus disorder prediction 1 29 - -
Sed07g1707 195 MobiDBLite consensus disorder prediction 119 138 - -
Sed07g1707 195 Gene3D Histone, subunit A 18 131 IPR009072 GO:0046982(InterPro)
Sed07g1707 195 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 134 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Sed07g1707 195 SUPERFAMILY Histone-fold 27 129 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0572 Sed-Chr1:4274438 Sed07g1707 Sed-Chr7:15719286 5.10E-45 dispersed
Sed05g3059 Sed-Chr5:40884007 Sed07g1707 Sed-Chr7:15719286 2.70E-45 dispersed
Sed07g1707 Sed-Chr7:15719286 Sed08g2902 Sed-Chr8:40048530 5.80E-41 dispersed
Sed13g0981 Sed-Chr13:7580450 Sed07g1707 Sed-Chr7:15719286 7.60E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39117 PF00808 CBFD_NFYB_HMF 5.00E-27 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1707 K08065 - csv:101214273 300.056