Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1708 ATGAACTCATCATCAACTAAATTTTACAATCTAGGGAAGATGGGACTGTATGAGCCAGTCCACCACCAGCTTGGAATGTGGGGAGAAGCCTTTAGAACACATGCTAATTTGGATGCACCACAATCTCTTATTATACACCCTGATACCAAGCTAGAAAATCAGTCAGATGATGCTTCACTCGGTTCGTTAGGAGATGCCCATATATATGACCCAAGAGATACCAAACGTATTGATAAGATTCAAAGACGGCTGGCTCAAAATCGAGAAGCAGCTCGCAAGAGTCGACTACGAAAGAAGGCTTATATTAAGCAATTGGAAACAAGCCGCTTGAAACTCATTCAATTAGAGCAAGAGGTCGATAAAGCAAGACAGCAAGGTCTGCGTGCTGGGTCCCAATTTGATAATAACCAATTGGGTTTATCTGGAACCACAAATTCAGGCATCTCCGCATTTGAATCAGAGTACGAGCAATGGATAGAAGAACAAAACAGGCAGATTTGTGATCTGAGGACTGCTGTGCACGCTGATATCACCGATATCGAGCTTCGTATACTAGTAGAAAATTCAATGAGACACTACTTTAAATTTTTTCACATAAAAGCTGAAGCTGCAAAAGCCGATGTCTCTTACATAATGTCAGGCATGTGGAAAACAGCAGCAGAAAGACTTTTCTTATGGATCGGAGGATTTCGCCCTTCAGAACTTCTCAAGGTTTTGATACCTCAGCTGGAGACACTCACCGAGCAACAAATATCAGATACCAGTAGCCTTAGGAAATCATGTGTACAAGCAGAAGATGCTCTAAGGCAAGGTATGGAAAAACTACAGCAAAACTTATTCGAGAGCGTAGTGGCGGGTCAGCTGGGTGAAGAAGGAACTTACCCCCTACAGATGACTGCTGCAATGGAGAGGCTAGAAGCACTCGTAAGCTTTGTGAATCAGGCTGACCATCTACGACAGGAAACCTTACAACAGATGTACAAAATTTTAACAACTCGGCAATCTGCTCAAGGTCTTCTTACTCTAGGCGAGTTTTTCCAACGACTCCGAGCATTGAGCTCGCTGTGGGCGAACCGTCCTTGCGACCCTGCTTAG 1095 43.74 MNSSSTKFYNLGKMGLYEPVHHQLGMWGEAFRTHANLDAPQSLIIHPDTKLENQSDDASLGSLGDAHIYDPRDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRLKLIQLEQEVDKARQQGLRAGSQFDNNQLGLSGTTNSGISAFESEYEQWIEEQNRQICDLRTAVHADITDIELRILVENSMRHYFKFFHIKAEAAKADVSYIMSGMWKTAAERLFLWIGGFRPSELLKVLIPQLETLTEQQISDTSSLRKSCVQAEDALRQGMEKLQQNLFESVVAGQLGEEGTYPLQMTAAMERLEALVSFVNQADHLRQETLQQMYKILTTRQSAQGLLTLGEFFQRLRALSSLWANRPCDPA 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15745639 15756044 - Sed0004767.1 Sed07g1708 720572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1708 364 ProSiteProfiles DOG1 domain profile. 148 359 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed07g1708 364 SMART brlzneu 75 139 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1708 364 Gene3D - 78 133 - -
Sed07g1708 364 Pfam Seed dormancy control 165 240 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed07g1708 364 PANTHER TRANSCRIPTION FACTOR TGA9 1 363 - -
Sed07g1708 364 FunFam BZIP family transcription factor 78 127 - -
Sed07g1708 364 SUPERFAMILY Leucine zipper domain 79 112 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1708 364 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 82 97 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1708 364 Pfam bZIP transcription factor 78 107 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1708 364 Coils Coil 98 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1708 Sed-Chr7:15745639 Sed07g1711 Sed-Chr7:15745639 1.30E-198 dispersed
Sed07g1708 Sed-Chr7:15745639 Sed07g1709 Sed-Chr7:15745639 7.50E-191 tandem
Sed13g0972 Sed-Chr13:7517364 Sed07g1708 Sed-Chr7:15745639 2.30E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39118 PF14144 DOG1 2.90E-27 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1708 K14431 - csv:116401613 646.351