Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g1709 | ATGGGACTGTATGAGCCAGTCCACCACCAGCTTGGAATGTGGGGAGAAGCCTTTAGAACACATGCTAATTTGGATGCACCACAATCTCTTATTATACACCCTGATACCAAGCTAGAAAATCAGTCAGATGATGCTTCACTCGGTTCGTTAGGAGATGCCCATATATATGACCCAAGAGATACCAAACGTATTGATAAGATTCAAAGACGGCTGGCTCAAAATCGAGAAGCAGCTCGCAAGAGTCGACTACGAAAGAAGGCTTATATTAAGCAATTGGAAACAAGCCGCTTGAAACTCATTCAATTAGAGCAAGAGGTCGATAAAGCAAGACAGCAAGGTCTGCGTGCTGGGTCCCAATTTGATAATAACCAATTGGGTTTATCTGGAACCACAAATTCAGGCATCTCCGCATTTGAATCAGAGTACGAGCAATGGATAGAAGAACAAAACAGGCAGATTTGTGATCTGAGGACTGCTGTGCACGCTGATATCACCGATATCGAGCTTCGTATACTAGTAGAAAATTCAATGAGACACTACTTTAAATTTTTTCACATAAAAGCTGAAGCTGCAAAAGCCGATGTCTCTTACATAATGTCAGGCATGTGGAAAACAGCAGCAGAAAGACTTTTCTTATGGATCGGAGGATTTCGCCCTTCAGAACTTCTCAAGGTTTTGATACCTCAGCTGGAGACACTCACCGAGCAACAAATATCAGATACCAGTAGCCTTAGGAAATCATGTGTACAAGCAGAAGATGCTCTAAGGCAAGGTATGGAAAAACTACAGCAAAACTTATTCGAGAGCGTAGTGGCGGGTCAGCTGGGTGAAGAAGGAACTTACCCCCTACAGATGACTGCTGCAATGGAGAGGCTAGAAGCACTCGTAAGCTTTGTGAATCAGGAAACCTTACAACAGATGTACAAAATTTTAACAACTCGGCAATCTGCTCAAGGTCTTCTTACTCTAGGCGAGTTTTTCCAACGACTCCGAGCATTGAGCTCGCTGTGGGCGAACCGTCCTTGCGACCCTGCTTAG | 1038 | 44.03 | MGLYEPVHHQLGMWGEAFRTHANLDAPQSLIIHPDTKLENQSDDASLGSLGDAHIYDPRDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRLKLIQLEQEVDKARQQGLRAGSQFDNNQLGLSGTTNSGISAFESEYEQWIEEQNRQICDLRTAVHADITDIELRILVENSMRHYFKFFHIKAEAAKADVSYIMSGMWKTAAERLFLWIGGFRPSELLKVLIPQLETLTEQQISDTSSLRKSCVQAEDALRQGMEKLQQNLFESVVAGQLGEEGTYPLQMTAAMERLEALVSFVNQETLQQMYKILTTRQSAQGLLTLGEFFQRLRALSSLWANRPCDPA | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 15745639 | 15756044 | - | Sed0004767.2 | Sed07g1709 | 720573 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g1709 | 345 | SMART | brlzneu | 62 | 126 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g1709 | 345 | Coils | Coil | 85 | 112 | - | - | |
Sed07g1709 | 345 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 9 | 344 | - | - | |
Sed07g1709 | 345 | Pfam | bZIP transcription factor | 65 | 94 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g1709 | 345 | SUPERFAMILY | Leucine zipper domain | 66 | 99 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g1709 | 345 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 69 | 84 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g1709 | 345 | Gene3D | - | 65 | 120 | - | - | |
Sed07g1709 | 345 | ProSiteProfiles | DOG1 domain profile. | 135 | 340 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed07g1709 | 345 | Pfam | Seed dormancy control | 152 | 227 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed07g1709 | 345 | FunFam | BZIP family transcription factor | 65 | 114 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g1709 | Sed-Chr7:15745639 | Sed07g1711 | Sed-Chr7:15745639 | 1.30E-192 | dispersed | |
Sed07g1708 | Sed-Chr7:15745639 | Sed07g1709 | Sed-Chr7:15745639 | 7.50E-191 | tandem | |
Sed07g1709 | Sed-Chr7:15745639 | Sed07g1710 | Sed-Chr7:15745639 | 1.20E-190 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39119 | PF14144 | DOG1 | 2.70E-27 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g1709 | K14431 | - | csv:101208419 | 605.52 |