Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1709 ATGGGACTGTATGAGCCAGTCCACCACCAGCTTGGAATGTGGGGAGAAGCCTTTAGAACACATGCTAATTTGGATGCACCACAATCTCTTATTATACACCCTGATACCAAGCTAGAAAATCAGTCAGATGATGCTTCACTCGGTTCGTTAGGAGATGCCCATATATATGACCCAAGAGATACCAAACGTATTGATAAGATTCAAAGACGGCTGGCTCAAAATCGAGAAGCAGCTCGCAAGAGTCGACTACGAAAGAAGGCTTATATTAAGCAATTGGAAACAAGCCGCTTGAAACTCATTCAATTAGAGCAAGAGGTCGATAAAGCAAGACAGCAAGGTCTGCGTGCTGGGTCCCAATTTGATAATAACCAATTGGGTTTATCTGGAACCACAAATTCAGGCATCTCCGCATTTGAATCAGAGTACGAGCAATGGATAGAAGAACAAAACAGGCAGATTTGTGATCTGAGGACTGCTGTGCACGCTGATATCACCGATATCGAGCTTCGTATACTAGTAGAAAATTCAATGAGACACTACTTTAAATTTTTTCACATAAAAGCTGAAGCTGCAAAAGCCGATGTCTCTTACATAATGTCAGGCATGTGGAAAACAGCAGCAGAAAGACTTTTCTTATGGATCGGAGGATTTCGCCCTTCAGAACTTCTCAAGGTTTTGATACCTCAGCTGGAGACACTCACCGAGCAACAAATATCAGATACCAGTAGCCTTAGGAAATCATGTGTACAAGCAGAAGATGCTCTAAGGCAAGGTATGGAAAAACTACAGCAAAACTTATTCGAGAGCGTAGTGGCGGGTCAGCTGGGTGAAGAAGGAACTTACCCCCTACAGATGACTGCTGCAATGGAGAGGCTAGAAGCACTCGTAAGCTTTGTGAATCAGGAAACCTTACAACAGATGTACAAAATTTTAACAACTCGGCAATCTGCTCAAGGTCTTCTTACTCTAGGCGAGTTTTTCCAACGACTCCGAGCATTGAGCTCGCTGTGGGCGAACCGTCCTTGCGACCCTGCTTAG 1038 44.03 MGLYEPVHHQLGMWGEAFRTHANLDAPQSLIIHPDTKLENQSDDASLGSLGDAHIYDPRDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRLKLIQLEQEVDKARQQGLRAGSQFDNNQLGLSGTTNSGISAFESEYEQWIEEQNRQICDLRTAVHADITDIELRILVENSMRHYFKFFHIKAEAAKADVSYIMSGMWKTAAERLFLWIGGFRPSELLKVLIPQLETLTEQQISDTSSLRKSCVQAEDALRQGMEKLQQNLFESVVAGQLGEEGTYPLQMTAAMERLEALVSFVNQETLQQMYKILTTRQSAQGLLTLGEFFQRLRALSSLWANRPCDPA 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15745639 15756044 - Sed0004767.2 Sed07g1709 720573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1709 345 SMART brlzneu 62 126 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1709 345 Coils Coil 85 112 - -
Sed07g1709 345 PANTHER TRANSCRIPTION FACTOR TGA9 9 344 - -
Sed07g1709 345 Pfam bZIP transcription factor 65 94 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1709 345 SUPERFAMILY Leucine zipper domain 66 99 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1709 345 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 69 84 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1709 345 Gene3D - 65 120 - -
Sed07g1709 345 ProSiteProfiles DOG1 domain profile. 135 340 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed07g1709 345 Pfam Seed dormancy control 152 227 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed07g1709 345 FunFam BZIP family transcription factor 65 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1709 Sed-Chr7:15745639 Sed07g1711 Sed-Chr7:15745639 1.30E-192 dispersed
Sed07g1708 Sed-Chr7:15745639 Sed07g1709 Sed-Chr7:15745639 7.50E-191 tandem
Sed07g1709 Sed-Chr7:15745639 Sed07g1710 Sed-Chr7:15745639 1.20E-190 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39119 PF14144 DOG1 2.70E-27 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1709 K14431 - csv:101208419 605.52