Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1710 ATGGGACTGTATGAGCCAGTCCACCACCAGCTTGGAATGTGGGGAGAAGCCTTTAGAACACATGCTAATTTGGATGCACCACAATCTCTTATTATACACCCTGATACCAAGCTAGAAAATCAGTCAGATGATGCTTCACTCGGTTCGTTAGGAGATGCCCATATATATGACCCAAGAGATACCAAACGTATTGATAAGATTCAAAGACGGCTGGCTCAAAATCGAGAAGCAGCTCGCAAGAGTCGACTACGAAAGAAGGCTTATATTAAGCAATTGGAAACAAGCCGCTTGAAACTCATTCAATTAGAGCAAGAGGTCGATAAAGCAAGACAGCAAGGTCTGCGTGCTGGGTCCCAATTTGATAATAACCAATTGGGTTTATCTGGAACCACAAATTCAGGCATCTCCGCATTTGAATCAGAGTACGAGCAATGGATAGAAGAACAAAACAGGCAGATTTGTGATCTGAGGACTGCTGTGCACGCTGATATCACCGATATCGAGCTTCGTATACTAGTAGAAAATTCAATGAGACACTACTTTAAATTTTTTCACATAAAAGCTGAAGCTGCAAAAGCCGATGTCTCTTACATAATGTCAGGCATGTGGAAAACAGCAGCAGAAAGACTTTTCTTATGGATCGGAGGATTTCGCCCTTCAGAACTTCTCAAGGTTTTGATACCTCAGCTGGAGACACTCACCGAGCAACAAATATCAGATACCAGTAGCCTTAGGAAATCATGTGTACAAGCAGAAGATGCTCTAAGGCAAGGTATGGAAAAACTACAGCAAAACTTATTCGAGAGCGTAGTGGCGGGTCAGCTGGGTGAAGAAGGAACTTACCCCCTACAGATGACTGCTGCAATGGAGAGGCTAGAAGCACTCGTAAGCTTTGTGAATCAGGCTGACCATCTACGACAGGAAACCTTACAACAGATGTACAAAATTTTAACAACTCGGCAATCTGCTCAAGGTCTTCTTACTCTAGGCGAGTTTTTCCAACGACTCCGAGCATTGAGCTCGCTGTGGGCGAACCGTCCTTGCGACCCTGCTTAG 1056 44.22 MGLYEPVHHQLGMWGEAFRTHANLDAPQSLIIHPDTKLENQSDDASLGSLGDAHIYDPRDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRLKLIQLEQEVDKARQQGLRAGSQFDNNQLGLSGTTNSGISAFESEYEQWIEEQNRQICDLRTAVHADITDIELRILVENSMRHYFKFFHIKAEAAKADVSYIMSGMWKTAAERLFLWIGGFRPSELLKVLIPQLETLTEQQISDTSSLRKSCVQAEDALRQGMEKLQQNLFESVVAGQLGEEGTYPLQMTAAMERLEALVSFVNQADHLRQETLQQMYKILTTRQSAQGLLTLGEFFQRLRALSSLWANRPCDPA 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15745639 15756044 - Sed0004767.3 Sed07g1710 720574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1710 351 SMART brlzneu 62 126 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1710 351 SUPERFAMILY Leucine zipper domain 66 99 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1710 351 Pfam bZIP transcription factor 65 94 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1710 351 Coils Coil 85 112 - -
Sed07g1710 351 Pfam Seed dormancy control 152 227 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed07g1710 351 PANTHER TRANSCRIPTION FACTOR TGA9 9 350 - -
Sed07g1710 351 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 69 84 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1710 351 Gene3D - 65 120 - -
Sed07g1710 351 ProSiteProfiles DOG1 domain profile. 135 346 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed07g1710 351 FunFam BZIP family transcription factor 65 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1710 Sed-Chr7:15745639 Sed07g1712 Sed-Chr7:15745639 2.10E-166 dispersed
Sed07g1709 Sed-Chr7:15745639 Sed07g1710 Sed-Chr7:15745639 1.20E-190 tandem
Sed07g1710 Sed-Chr7:15745639 Sed07g1711 Sed-Chr7:15745639 1.20E-190 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39120 PF14144 DOG1 2.80E-27 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1710 K14431 - csv:116401613 624.394