Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1712 ATGAACTCATCATCAACTAAATTTTACAATCTAGGGAAGATGGGACTGTATGAGCCAGTCCACCACCAGCTTGGAATGTGGGGAGAAGCCTTTAGAACACATGCTAATTTGGATGCACCACAATCTCTTATTATACACCCTGATACCAAGCTAGAAAATCAGTCAGATGATGCTTCACTCGGTTCGTTAGGAGATGCCCATATATATGACCCAAGAGATACCAAACGTATTGATAAGATTCAAAGACGGCTGGCTCAAAATCGAGAAGCAGCTCGCAAGAGTCGACTACGAAAGAAGGCTTATATTAAGCAATTGGAAACAAGCCGCTTGAAACTCATTCAATTAGAGCAAGAGGTCGATAAAGCAAGACAGCAAGGTCTGCGTGCTGGGTCCCAATTTGATAATAACCAATTGGGTTTATCTGGAACCACAAATTCAGGCATCTCCGCATTTGAATCAGAGTACGAGCAATGGATAGAAGAACAAAACAGGCAGATTTGTGATCTGAGGACTGCTGTGCACGCTGATATCACCGATATCGAGCTTCGTATACTAGTAGAAAATTCAATGAGACACTACTTTAAATTTTTTCACATAAAAGCTGAAGCTGCAAAAGCCGATGTCTCTTACATAATGTCAGGCATGTGGAAAACAGCAGCAGAAAGACTTTTCTTATGGATCGGAGGATTTCGCCCTTCAGAACTTCTCAAGGTTTTGATACCTCAGCTGGAGACACTCACCGAGCAACAAATATCAGATACCAGTAGCCTTAGGAAATCATGTGTACAAGCAGAAGATGCTCTAAGGCAAGGTATGGAAAAACTACAGCAAAACTTATTCGAGAGCGTAGTGGCGGGTCAGCTGGGTGAAGAAGGAACTTACCCCCTACAGATGACTGCTGCAATGGAGAGGCTAGAAGCACTCGTAAGCTTTGTGAATCAGGTATCATACTTCTTGGGCTCAACTGCACTACTCAAAATAAGATATGATGTGTTCTTATAA 1002 42.32 MNSSSTKFYNLGKMGLYEPVHHQLGMWGEAFRTHANLDAPQSLIIHPDTKLENQSDDASLGSLGDAHIYDPRDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRLKLIQLEQEVDKARQQGLRAGSQFDNNQLGLSGTTNSGISAFESEYEQWIEEQNRQICDLRTAVHADITDIELRILVENSMRHYFKFFHIKAEAAKADVSYIMSGMWKTAAERLFLWIGGFRPSELLKVLIPQLETLTEQQISDTSSLRKSCVQAEDALRQGMEKLQQNLFESVVAGQLGEEGTYPLQMTAAMERLEALVSFVNQVSYFLGSTALLKIRYDVFL 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15745639 15756044 - Sed0004767.5 Sed07g1712 720576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1712 333 FunFam BZIP family transcription factor 78 127 - -
Sed07g1712 333 SMART brlzneu 75 139 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1712 333 Pfam Seed dormancy control 165 240 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed07g1712 333 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 82 97 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1712 333 PANTHER TRANSCRIPTION FACTOR TGA9 1 315 - -
Sed07g1712 333 SUPERFAMILY Leucine zipper domain 79 112 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1712 333 Gene3D - 78 133 - -
Sed07g1712 333 Coils Coil 98 125 - -
Sed07g1712 333 ProSiteProfiles DOG1 domain profile. 148 333 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed07g1712 333 Pfam bZIP transcription factor 78 107 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1710 Sed-Chr7:15745639 Sed07g1712 Sed-Chr7:15745639 2.10E-166 dispersed
Sed07g1712 Sed-Chr7:15745639 Sed07g1714 Sed-Chr7:15745639 2.60E-174 dispersed
Sed07g1711 Sed-Chr7:15745639 Sed07g1712 Sed-Chr7:15745639 3.70E-174 tandem
Sed07g1712 Sed-Chr7:15745639 Sed07g1713 Sed-Chr7:15745639 9.60E-177 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39122 PF14144 DOG1 2.50E-27 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1712 K14431 - csv:101208419 551.206