Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1713 ATGGGACTGTATGAGCCAGTCCACCACCAGCTTGGAATGTGGGGAGAAGCCTTTAGAACACATGCTAATTTGGATGCACCACAATCTCTTATTATACACCCTGATACCAAGCTAGAAAATCAGTCAGATGATGCTTCACTCGGTTCGTTAGGAGATGCCCATATATATGACCCAAGAGATACCAAACGTATTGATAAGATTCAAAGACGGCTGGCTCAAAATCGAGAAGCAGCTCGCAAGAGTCGACTACGAAAGAAGGCTTATATTAAGCAATTGGAAACAAGCCGCTTGAAACTCATTCAATTAGAGCAAGAGGTCGATAAAGCAAGACAGCAAGGTCTGCGTGCTGGGTCCCAATTTGATAATAACCAATTGGGTTTATCTGGAACCACAAATTCAGGCATCTCCGCATTTGAATCAGAGTACGAGCAATGGATAGAAGAACAAAACAGGCAGATTTGTGATCTGAGGACTGCTGTGCACGCTGATATCACCGATATCGAGCTTCGTATACTAGTAGAAAATTCAATGAGACACTACTTTAAATTTTTTCACATAAAAGCTGAAGCTGCAAAAGCCGATGTCTCTTACATAATGTCAGGCATGTGGAAAACAGCAGCAGAAAGACTTTTCTTATGGATCGGAGGATTTCGCCCTTCAGAACTTCTCAAGGTTTTGATACCTCAGCTGGAGACACTCACCGAGCAACAAATATCAGATACCAGTAGCCTTAGGAAATCATGTGTACAAGCAGAAGATGCTCTAAGGCAAGGTATGGAAAAACTACAGCAAAACTTATTCGAGAGCGTAGTGGCGGGTCAGCTGGGTGAAGAAGGAACTTACCCCCTACAGATGACTGCTGCAATGGAGAGGCTAGAAGCACTCGTAAGCTTTGTGAATCAGGTATCATACTTCTTGGGCTCAACTGCACTACTCAAAATAAGATATGATGTGTTCTTATAA 963 42.78 MGLYEPVHHQLGMWGEAFRTHANLDAPQSLIIHPDTKLENQSDDASLGSLGDAHIYDPRDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRLKLIQLEQEVDKARQQGLRAGSQFDNNQLGLSGTTNSGISAFESEYEQWIEEQNRQICDLRTAVHADITDIELRILVENSMRHYFKFFHIKAEAAKADVSYIMSGMWKTAAERLFLWIGGFRPSELLKVLIPQLETLTEQQISDTSSLRKSCVQAEDALRQGMEKLQQNLFESVVAGQLGEEGTYPLQMTAAMERLEALVSFVNQVSYFLGSTALLKIRYDVFL 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15745639 15756044 - Sed0004767.6 Sed07g1713 720577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1713 320 SMART brlzneu 62 126 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1713 320 FunFam BZIP family transcription factor 65 114 - -
Sed07g1713 320 Coils Coil 85 112 - -
Sed07g1713 320 ProSiteProfiles DOG1 domain profile. 135 320 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed07g1713 320 Pfam bZIP transcription factor 65 94 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1713 320 SUPERFAMILY Leucine zipper domain 66 99 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1713 320 Pfam Seed dormancy control 152 227 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed07g1713 320 PANTHER TRANSCRIPTION FACTOR TGA9 9 302 - -
Sed07g1713 320 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 69 84 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g1713 320 Gene3D - 65 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1713 Sed-Chr7:15745639 Sed13g0972 Sed-Chr13:7517364 9.60E-134 dispersed
Sed07g1712 Sed-Chr7:15745639 Sed07g1713 Sed-Chr7:15745639 9.60E-177 tandem
Sed07g1713 Sed-Chr7:15745639 Sed07g1714 Sed-Chr7:15745639 2.50E-166 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39123 PF14144 DOG1 2.40E-27 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1713 K14431 - csv:101208419 529.25