Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g1714 | ATGAACTCATCATCAACTAAATTTTACAATCTAGGGAAGATGGGACTGTATGAGCCAGTCCACCACCAGCTTGGAATGTGGGGAGAAGCCTTTAGAACACATGCTAATTTGGATGCACCACAATCTCTTATTATACACCCTGATACCAAGCTAGAAAATCAGTCAGATGATGCTTCACTCGGTTCGTTAGGAGATGCCCATATATATGACCCAAGAGATACCAAACGTATTGATAAGATTCAAAGACGGCTGGCTCAAAATCGAGAAGCAGCTCGCAAGAGTCGACTACGAAAGAAGGCTTATATTAAGCAATTGGAAACAAGCCGCTTGAAACTCATTCAATTAGAGCAAGAGGTCGATAAAGCAAGACAGCAAGGTCTGCGTGCTGGGTCCCAATTTGATAATAACCAATTGGGTTTATCTGGAACCACAAATTCAGGCATCTCCGCATTTGAATCAGAGTACGAGCAATGGATAGAAGAACAAAACAGGCAGATTTGTGATCTGAGGACTGCTGTGCACGCTGATATCACCGATATCGAGCTTCGTATACTAGTAGAAAATTCAATGAGACACTACTTTAAATTTTTTCACATAAAAGCTGAAGCTGCAAAAGCCGATGTCTCTTACATAATGTCAGGCATGTGGAAAACAGCAGCAGAAAGACTTTTCTTATGGATCGGAGGATTTCGCCCTTCAGAACTTCTCAAGGTTTTGATACCTCAGCTGGAGACACTCACCGAGCAACAAATATCAGATACCAGTAGCCTTAGGAAATCATGTGTACAAGCAGAAGATGCTCTAAGGCAAGGTATGGAAAAACTACAGCAAAACTTATTCGAGAGCGTAGTGGCGGGTCAGCTGGGTGAAGAAGGAACTTACCCCCTACAGATGACTGCTGCAATGGAGAGGCTAGAAGCACTCGTAAGCTTTGTGAATCAGGGTCAGGTGGTATATCTTGTGACATTCGTCAAGATGCACACAAGCTGGCCCGGACAGTCACGAATATAA | 1011 | 43.22 | MNSSSTKFYNLGKMGLYEPVHHQLGMWGEAFRTHANLDAPQSLIIHPDTKLENQSDDASLGSLGDAHIYDPRDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRLKLIQLEQEVDKARQQGLRAGSQFDNNQLGLSGTTNSGISAFESEYEQWIEEQNRQICDLRTAVHADITDIELRILVENSMRHYFKFFHIKAEAAKADVSYIMSGMWKTAAERLFLWIGGFRPSELLKVLIPQLETLTEQQISDTSSLRKSCVQAEDALRQGMEKLQQNLFESVVAGQLGEEGTYPLQMTAAMERLEALVSFVNQGQVVYLVTFVKMHTSWPGQSRI | 336 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 15745639 | 15756044 | - | Sed0004767.7 | Sed07g1714 | 720578 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g1714 | 336 | FunFam | BZIP family transcription factor | 78 | 127 | - | - | |
Sed07g1714 | 336 | SMART | brlzneu | 75 | 139 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g1714 | 336 | ProSiteProfiles | DOG1 domain profile. | 148 | 336 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed07g1714 | 336 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 82 | 97 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g1714 | 336 | Pfam | Seed dormancy control | 165 | 240 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed07g1714 | 336 | Gene3D | - | 78 | 133 | - | - | |
Sed07g1714 | 336 | Coils | Coil | 98 | 125 | - | - | |
Sed07g1714 | 336 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 1 | 327 | - | - | |
Sed07g1714 | 336 | Pfam | bZIP transcription factor | 78 | 107 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed07g1714 | 336 | SUPERFAMILY | Leucine zipper domain | 79 | 112 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g1711 | Sed-Chr7:15745639 | Sed07g1714 | Sed-Chr7:15745639 | 3.70E-174 | dispersed | |
Sed07g1712 | Sed-Chr7:15745639 | Sed07g1714 | Sed-Chr7:15745639 | 2.60E-174 | dispersed | |
Sed07g1714 | Sed-Chr7:15745639 | Sed13g0972 | Sed-Chr13:7517364 | 8.60E-141 | dispersed | |
Sed07g1713 | Sed-Chr7:15745639 | Sed07g1714 | Sed-Chr7:15745639 | 2.50E-166 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39124 | PF14144 | DOG1 | 2.60E-27 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g1714 | K14431 | - | csv:116401613 | 551.206 |