Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1733 ATGTCGGTTGCCAACACCGATACATCTCCGACTATGTTGGAGCCCTCGACAGTGGAGGACGTAGAGAAGAGCAGCCCTATAGAGAGGGCTAAGTGGGTGGCAAACCCACCAGAGCCACCGGGGCTATGGCGAGAGCTCATCGATTCTCTCCGCGACACGGTTCTTCCCGATCCGACCAAGCTTTGGTCCCTCAAGAAGAAGAGCGGAACCGCTGTGGTTGGTTCTCTTTTGCAGGCCATCTTCCCCATCCTCTCATGGGGCAGGACGTACAGTCCCGCCAAGTTGAAGAACGACATCTTGGCCGGCTTCACTCTCGCTAGCCTCTGCATTCCCCAGAGTATTGGGTATGCAAATCTGGCGAAGCTTGAACCTCAATACGGGCTGTATACAAGCATAGTGCCGCCGCTTGTTTATTCAGTGTTGGGAACATCAAGGGAGATAGCCATCGGTCCGGTGGCCATAGTGTCTCTGCTTTTGCCGGCGATGATACAGAAGATTCAAGATCCCGCCGCCGACCCTCTTGCTTACACAAACCTTGTCTTCACCGCCACTTTCTTCGCCGGAATCTTTCAGGCCGCCTTCGGACTCTTCCGGCTGGGATTTTTGGTGGATTTTCTGTCCCATGCTGCCACAGTTGGGTTCATGGGTGGAGCTGCCATTGTAATTGGGCTTCAACAGCTCAAAGGACTGCTTGGAATCTCTCACTTCACTAACAAAACTGATATCCTCTCTGTTATCAAAGCTGTGTTTGGATCTTTTCATCATGACCCTTGGAATCCATTCAACTTCATCATTGGCTCCTCATTCCTGTCCTTCATACTCATCGCCAGATTAGTGGGGAAAAAGTACAAGAAAGTGTTCTGGTTAGGAGCCATAGCTCCACTTGTTTGTGTAATTGTGTCAACACTTATAGTGTTTCTCACAAGAGCTGACCTCCATGGCGTGAAGATCGTCAAACAAGTCCCCGCCGGCCTCAATCCCATTTCGGCTCATCACATCCAAATCCATAGCCCTCGCATCCCCCAAATCGCCAAGATCAGCCTCATTGTCGCCGTTGTTGCCCTCACGGAAGCCATTGCTGTGGGAAGATCGTTCGCGTCTATGAAAGGATACAACATTGATGGAAACAGAGAGATGATCGCATTAGGGTTCATGAACATCGTCGGATCCCTCACTTCTTGCTACACAGCAACTGGTTCATTCTCGCGATCGGCAGTGAATTACAGTGCGGGATGTGAGACGGCAGTGTCGAACATAGTGATGGCTATCACGGTGATGGTCTCTCTCGAGCTGTTCACCAAGCTTCTCTATTTCACTCCCAATGCCATTCTCGCTTCCATTATTCTCTCTGCCCTTCCCGGCCTTGTTGATCTTCATGAAGCTTATAATATATGGAAGATCGATAAGCTCGACTTCTTCGTTTGCCTAGCTGCTTTCTTCGGTGTGCTCTTTGTTTCCGTCGAAATGGGCCTCCTCCTCTCGGTAGTGATATCATTTGGCAAGATAGTGCTAATCACAATCAAACCTGGAACTGAGATTTTGGGGAAAGTCCCTGGAACTCATAACTTTTGTGATATTCATCAGTATCCAATGGCTCTCAAAACTCCTGGAGTTGTCGTTATCCGTGTTAAATCGGGCTTGCTTTGTTTTGCCAACGCCAACTTTGTCAAAGATAGGATTTTGAGATTCATCAGCAGCAAAGAAGAGGCACCAACAAAGCGAAGCATTCACTTCCTAGTCATTGACCTCTCCAATTTAATGAACATTGACACTTCAGCAATTGCTTCGCTTGAAGAACTTCAGAATGGTTTGGCAGCCAGTGGAGTAGAGTTGGCCATTGCAAATCCAAAATGGCAAGTGATTCACAAGCTAAAGATATCAAATTTTGCTGCCAAGCTCAAAGGGAAAGTGTTCTTGAGTGTTGAGGAAGCTGTGGATGCATGCCTTTCAGCTAAAATGGGAGCCATTTAA 1971 48.3 MSVANTDTSPTMLEPSTVEDVEKSSPIERAKWVANPPEPPGLWRELIDSLRDTVLPDPTKLWSLKKKSGTAVVGSLLQAIFPILSWGRTYSPAKLKNDILAGFTLASLCIPQSIGYANLAKLEPQYGLYTSIVPPLVYSVLGTSREIAIGPVAIVSLLLPAMIQKIQDPAADPLAYTNLVFTATFFAGIFQAAFGLFRLGFLVDFLSHAATVGFMGGAAIVIGLQQLKGLLGISHFTNKTDILSVIKAVFGSFHHDPWNPFNFIIGSSFLSFILIARLVGKKYKKVFWLGAIAPLVCVIVSTLIVFLTRADLHGVKIVKQVPAGLNPISAHHIQIHSPRIPQIAKISLIVAVVALTEAIAVGRSFASMKGYNIDGNREMIALGFMNIVGSLTSCYTATGSFSRSAVNYSAGCETAVSNIVMAITVMVSLELFTKLLYFTPNAILASIILSALPGLVDLHEAYNIWKIDKLDFFVCLAAFFGVLFVSVEMGLLLSVVISFGKIVLITIKPGTEILGKVPGTHNFCDIHQYPMALKTPGVVVIRVKSGLLCFANANFVKDRILRFISSKEEAPTKRSIHFLVIDLSNLMNIDTSAIASLEELQNGLAASGVELAIANPKWQVIHKLKISNFAAKLKGKVFLSVEEAVDACLSAKMGAI 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16184139 16196890 - Sed0021326.1 Sed07g1733 720597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1733 656 FunFam Sulfate transporter 31 508 651 - -
Sed07g1733 656 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Sed07g1733 656 MobiDBLite consensus disorder prediction 1 15 - -
Sed07g1733 656 MobiDBLite consensus disorder prediction 1 31 - -
Sed07g1733 656 Gene3D STAS domain 508 651 IPR036513 -
Sed07g1733 656 SUPERFAMILY SpoIIaa-like 534 648 IPR036513 -
Sed07g1733 656 CDD STAS_SulP_like_sulfate_transporter 529 633 - -
Sed07g1733 656 Pfam STAS domain 529 644 IPR002645 -
Sed07g1733 656 Pfam Sulfate permease family 95 478 IPR011547 GO:0016020(InterPro)
Sed07g1733 656 NCBIfam sulfate permease 82 643 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g1733 656 PANTHER SULFATE TRANSPORTER 71 650 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed07g1733 656 ProSiteProfiles STAS domain profile. 545 648 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0855 Sed-Chr3:5208725 Sed07g1733 Sed-Chr7:16184139 8.00E-215 dispersed
Sed07g1733 Sed-Chr7:16184139 Sed12g1415 Sed-Chr12:11758550 3.30E-181 dispersed
Sed07g1733 Sed-Chr7:16184139 Sed09g1100 Sed-Chr9:34958780 4.50E-154 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1733 K17469 - csv:116403192 1019.99