Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1748 ATGGTTGAATTCCACGGAGAAATCCAGGATGAGGAAAACGAAGAGGAGATTATTACTTACGATGATCTTAAGAAACGAATGTGGAAAGACAGACAGAGGCTGAAGAAGATGAAGGAGAATCGCGAGCCAGAATCTGGTGCCAGAGAAGAGGCTTCTCGCCGGAAGAAGATGGCCAGAGCCCAAGACTCCATCCTCAAGTACATGGACAAGATCATGGATGCATGCAAGGCGCAGGGCTTTGTCTACGGGATCGTCCCCCAGAAGGGGAAGCCGGTCACCGGGTCCTCCGAGAGCCTCCGCCAGTGGTGGCGCGACGACGTCCGCTTCGACCTGGGTGCGCCCATGGCCATAGACATAGCCAGGTTTCTGCCCAAAGTGATCCAGGAAACGGGGCTGGATCATGAGTCCTTCCTGCACCTGCTGCAGGAGTTGCAGGACACCACATTGGGGTCCATTCTGTCGGCTCTGATGCAGCACTGCATTCCGCCACAGAGGAAGTTCCCCCTCGACAAGGGACTGGCCCCGCCGTGGTGGCCGACCGGGGAGGAGCTTTGGTGGGGCGAACAAGGCTCCGCGGGCGGCCACGGGGTTCCTCCTTATAAAAAGCCCCACGACCTGAAAAAGGCATGGAAGATCAGTGTGCTGGCCGCCGTGATCAAACACATGTCTCCCGACTTGGAGAACATGAGGAAACTGGTTCGACAATCCAAGAACTTGCAGGCGAAAATGACGGCGAAGGAGACGCTTACTTGGGCTAAAGTGATGAATCAAGAGGAAGCTCTCCTGATATTAACCGAAAAGAGCCTCAAAATCACGGATGACAACAAGGAACGCGAGAACGGAAGAGAAAAGGAGAGGGGTGGGATGATGATGACGAAACGAAAATGCGCATTCGCATTCGAACAAGAAGAAGCAGGAGAGGAATGTGCGCTGTACAGTTGCCTGAACCAATTGTGCCCAGAGGGGGAGGTGCCAGCGCCGGTGTGGTTGGCAGAGAAGAGCGCGAGAATGGAGGAGGAGCCACTGATCGACACGCATTTGAAGAGCGTGGTGGAGTGGATGAACTGGGAGTTGTCACGGGCGGAACCGAGCAGCAGCGAGGGGAGGACCGAGGATGGGTCGGTGGAGGATTACGGGAGCGTGTATTGGAAGGGCGGGGTGGGAGAGGTGGGAGCGGACGAGGCGTTTGAGATGCACAAGGAGGGTATGGATTTGAATGCCAGTCCCACCCAAGTTTTGGGTACTGCGGCTGCCCAACAAGATGCAACTTCCATTTGGGATTTGAGATATGAATGGACTGAAGATTAA 1308 55.2 MVEFHGEIQDEENEEEIITYDDLKKRMWKDRQRLKKMKENREPESGAREEASRRKKMARAQDSILKYMDKIMDACKAQGFVYGIVPQKGKPVTGSSESLRQWWRDDVRFDLGAPMAIDIARFLPKVIQETGLDHESFLHLLQELQDTTLGSILSALMQHCIPPQRKFPLDKGLAPPWWPTGEELWWGEQGSAGGHGVPPYKKPHDLKKAWKISVLAAVIKHMSPDLENMRKLVRQSKNLQAKMTAKETLTWAKVMNQEEALLILTEKSLKITDDNKERENGREKERGGMMMTKRKCAFAFEQEEAGEECALYSCLNQLCPEGEVPAPVWLAEKSARMEEEPLIDTHLKSVVEWMNWELSRAEPSSSEGRTEDGSVEDYGSVYWKGGVGEVGADEAFEMHKEGMDLNASPTQVLGTAAAQQDATSIWDLRYEWTED 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17462282 17463589 + Sed0003324.1 Sed07g1748 720612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1748 435 Coils Coil 20 40 - -
Sed07g1748 435 FunFam Ethylene insensitive 3-like 1 132 269 - -
Sed07g1748 435 Gene3D - 131 268 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed07g1748 435 Gene3D - 46 119 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed07g1748 435 Pfam Ethylene insensitive 3, DNA-binding domain 21 259 IPR047091 GO:0003700(InterPro)
Sed07g1748 435 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 6 280 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Sed07g1748 435 MobiDBLite consensus disorder prediction 33 55 - -
Sed07g1748 435 SUPERFAMILY DNA-binding domain of EIN3-like 138 262 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1748 K14514 - - csv:101210698 569.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1748 Sed-Chr7:17462282 Sed11g1403 Sed-Chr11:29994556 4.40E-81 dispersed
Sed13g0935 Sed-Chr13:7066148 Sed07g1748 Sed-Chr7:17462282 2.90E-133 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g1623 . 2 628 EIL Transcription Factor Family AT2G27050 59.7 3.1e-194 676.0
Sed11g1403 . 1 506 EIL Transcription Factor Family AT2G27050 62.3 1.1e-167 587.8
Sed03g0538 . 8 560 EIL Transcription Factor Family AT2G27050 56.6 1.1e-162 571.2
Sed08g1058 . 44 326 EIL Transcription Factor Family AT2G27050 63.2 4.2e-95 346.7
Sed08g1059 . 44 326 EIL Transcription Factor Family AT2G27050 63.2 4.2e-95 346.7
Sed12g1593 . 66 322 EIL Transcription Factor Family AT2G27050 63.6 9.2e-90 328.9
Sed07g1748 . 8 295 EIL Transcription Factor Family AT2G27050 52.5 5.9e-81 299.7
Sed08g1058 . 44 590 EIL Transcription Factor Family AT1G73730 52.1 7.3e-137 485.3
Sed08g1059 . 44 590 EIL Transcription Factor Family AT1G73730 52.1 7.3e-137 485.3
Sed12g1593 . 58 575 EIL Transcription Factor Family AT1G73730 54.6 2.3e-135 480.3
Sed03g0538 . 35 335 EIL Transcription Factor Family AT1G73730 60.3 3.1e-103 373.6
Sed12g1623 . 36 334 EIL Transcription Factor Family AT1G73730 61.6 3.1e-103 373.6
Sed11g1403 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 1.2e-102 371.7
Sed07g1748 . 15 262 EIL Transcription Factor Family AT1G73730 53.9 3.7e-72 270.4
Sed13g0935 . 21 269 EIL Transcription Factor Family AT1G73730 52.0 4.8e-72 270.0
Sed12g1623 . 3 628 EIL Transcription Factor Family AT3G20770 61.5 3.0e-211 732.6
Sed11g1403 . 7 504 EIL Transcription Factor Family AT3G20770 63.2 3.7e-169 592.8
Sed03g0538 . 7 501 EIL Transcription Factor Family AT3G20770 61.9 2.5e-165 580.1
Sed08g1058 . 44 292 EIL Transcription Factor Family AT3G20770 68.5 9.2e-96 349.0
Sed08g1059 . 44 292 EIL Transcription Factor Family AT3G20770 68.5 9.2e-96 349.0
Sed12g1593 . 66 288 EIL Transcription Factor Family AT3G20770 69.9 4.4e-90 330.1
Sed07g1748 . 8 261 EIL Transcription Factor Family AT3G20770 57.0 6.0e-79 293.1
Sed07g1748 . 7 274 EIL Transcription Factor Family AT5G65100 57.5 9.7e-89 325.5
Sed08g1058 . 44 288 EIL Transcription Factor Family AT5G65100 51.9 6.3e-72 269.6
Sed08g1059 . 44 288 EIL Transcription Factor Family AT5G65100 51.9 6.3e-72 269.6
Sed12g1593 . 83 284 EIL Transcription Factor Family AT5G65100 60.2 3.5e-70 263.8
Sed13g0935 . 21 359 EIL Transcription Factor Family AT5G10120 54.9 1.9e-98 357.5
Sed07g1748 . 12 324 EIL Transcription Factor Family AT5G10120 56.0 8.4e-94 342.0
Sed08g1058 . 44 290 EIL Transcription Factor Family AT5G10120 54.9 6.3e-73 272.7
Sed08g1059 . 44 290 EIL Transcription Factor Family AT5G10120 54.9 6.3e-73 272.7
Sed12g1593 . 77 286 EIL Transcription Factor Family AT5G10120 58.0 4.5e-71 266.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39125 PF04873 EIN3 3.10E-106 No_clan Sed TF