Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1765 ATGATGTTACTTAGGATGGGAGAACTCTATCTTACAATTCTTATGCTGGCTTGCTTTCATAACTTTGTGTTGTCTGATTATCAAGGTGATGCTCTCTATGCATTGAAGATTGCTTTGAATGCAACAGCAAATCAGCTCACAGATTGGAACCCAAATCAAGTCAATCCATGTACTTGGACCAGTGTTATATGTATTGGAAGCAATGTGACCTCTGTATCCTTGTCAACAATGGGATTTACGGGAACATTGTCTCCGAAAATTGGAGTTCTTAAATCACTTTCAACCCTGATTTTGCCTGGAAATCACATAACTGGAGAGATACCGAAGGATTTTGGAAACCTGACAAATTTGGTCAGTTTGGATTTGGGTAATAATGGTTTAACTGGTCAAATACCATCATCCTTGGGTAATCTTAAGAAACTACAGTTCCTAACTCTGAGTCAAAATCGTCTAACTGGGAATATTCCTGATTCACTTTCAAGCCTTCCTGGCTTGATAAGTCTTCTTCTTGACTCAAATGATCTTAGTGGCCCAATTCCGGAGAAGTTGTTTCAAGTTTCAAAATTCAACTTTTCTGGAAACCAGTTAAATTGTAGCGGGAAGTCTCGTGCATGTGCTTCAGATAATACAAACTCAGGTTCTTCAAATAAACCTAAGGTTGGCCTTATAGTTGGAATTATTGCTGGGTTTACCATTGCTCTTCTTTTGGTCGGTGTATTACTTTTCTTGTTCAAGGGTAGATATAAAGGCTACAAGCGCGAAGAGTTCGTTGATGTTGCAGGTGAAGTTGATCGAAGAATTGCATTTGGTCAACTGAAAAGATTTCTATGGAGGGAACTGCAGCATGCTACAGAAAACTTTAGTGAGAAAAATGTTTTAGGACAAGGAGGCTTTGGAAAAGTGTACAAAGGAGTGCTTGGTGATGGCACCAAAGTTGCCGTGAAACGGTTGACTGATTATGAAAGTCCAGGGGGAGATGCTGCTTTTCAGCGTGAAGTTGAGATGATTAGTGTAGCTGTTCATAGGAATCTGTTGCGGCTGATTGGGTTCTGTACAACTCAGACAGAACGCTTATTGGTGTATCCCTTCATGCAGAATTTGAGTGTTGCCTACCGTCTTCGAGAACTTAAGCCTGGGGAGCCTGCTTTAGATTGGCCTACCCGAAAACGCGTGGCATTGGGCACAGCTCGTGGTTTAGAGTATCTTCATGAACATTGCAATCCAAAGATTATTCATAGAGATGTTAAGGCAGCCAATGTATTGCTTGATGAAGATTTCGAAGCAGTTGTTGGCGATTTTGGCTTAGCGAAGCTGGTTGATGTTAGGAAGACTAATGTCACTACTCAAGTTCGAGGGACGATGGGCCACATCGCACCGGAGTACTTATCTACTGGAAAATCATCAGAAAGGACTGATGTTTTTGGTTATGGTATCATGCTTTTAGAACTTGTTACAGGGCAGCGTGCAATCGACTTCTCGCGCTTAGAAGAAGAAGATGATGTTTTACTACTCGACCATGTTAAGAAACTAGAAAGGGAAAAGCGACTGAGTGCTATCGTAGATCGAAATCTAAGCAACTACAACAGTCAAGAGGTGGAGATGATGATTCAAGTTGCATTGCTGTGCACACAGCCATGTTCGGACGACCGTCCAGCAATGTCGCAAGTCGTTCGGATGCTGGAAGGAGAGGGATTGGCAGAGAGGTGGGAAGAATGGCAGCATTTGGAGGTGACTCGCAGACAAGAGTATGATAGACTGCAGAGAAGATTTGAATGGGGAGAAGATTCTATTCATAGACAAGATGCAATTGAGTTGTCTGGTGGAAGATAA 1830 42.02 MMLLRMGELYLTILMLACFHNFVLSDYQGDALYALKIALNATANQLTDWNPNQVNPCTWTSVICIGSNVTSVSLSTMGFTGTLSPKIGVLKSLSTLILPGNHITGEIPKDFGNLTNLVSLDLGNNGLTGQIPSSLGNLKKLQFLTLSQNRLTGNIPDSLSSLPGLISLLLDSNDLSGPIPEKLFQVSKFNFSGNQLNCSGKSRACASDNTNSGSSNKPKVGLIVGIIAGFTIALLLVGVLLFLFKGRYKGYKREEFVDVAGEVDRRIAFGQLKRFLWRELQHATENFSEKNVLGQGGFGKVYKGVLGDGTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVAYRLRELKPGEPALDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLSAIVDRNLSNYNSQEVEMMIQVALLCTQPCSDDRPAMSQVVRMLEGEGLAERWEEWQHLEVTRRQEYDRLQRRFEWGEDSIHRQDAIELSGGR 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17989834 18011951 - Sed0001447.2 Sed07g1765 720629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1765 609 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524(InterPro)
Sed07g1765 609 Gene3D Phosphorylase Kinase; domain 1 256 363 - -
Sed07g1765 609 ProSiteProfiles Protein kinase domain profile. 287 565 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1765 609 FunFam Somatic embryogenesis receptor kinase 1 256 363 - -
Sed07g1765 609 SUPERFAMILY L domain-like 30 199 - -
Sed07g1765 609 FunFam Putative LRR receptor-like serine/threonine-protein kinase 25 207 - -
Sed07g1765 609 SUPERFAMILY Protein kinase-like (PK-like) 267 561 IPR011009 -
Sed07g1765 609 Pfam Protein tyrosine and serine/threonine kinase 290 560 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1765 609 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515(InterPro)
Sed07g1765 609 FunFam Somatic embryogenesis receptor-like kinase 1 364 580 - -
Sed07g1765 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1765 609 SMART serkin_6 287 560 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1765 609 Gene3D Transferase(Phosphotransferase) domain 1 364 580 - -
Sed07g1765 609 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 608 - -
Sed07g1765 609 Gene3D Ribonuclease Inhibitor 26 220 IPR032675 -
Sed07g1765 609 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1765 Sed-Chr7:17989834 Sed13g0948 Sed-Chr13:7181078 3.70E-203 dispersed
Sed07g1764 Sed-Chr7:17989834 Sed07g1765 Sed-Chr7:17989834 2.40E-295 tandem
Sed07g1765 Sed-Chr7:17989834 Sed07g1766 Sed-Chr7:17989834 2.40E-250 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79513 PF00069 Pkinase 1.80E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1765 - - - 0.0