Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1766 ATGGGATTTACGGGAACATTGTCTCCGAAAATTGGAGTTCTTAAATCACTTTCAACCCTGATTTTGCCTGGAAATCACATAACTGGAGAGATACCGAAGGATTTTGGAAACCTGACAAATTTGGTCAGTTTGGATTTGGGTAATAATGGTTTAACTGGTCAAATACCATCATCCTTGGGTAATCTTAAGAAACTACAGTTCCTAACTCTGAGTCAAAATCGTCTAACTGGGAATATTCCTGATTCACTTTCAAGCCTTCCTGGCTTGATAAGTCTTCTTCTTGACTCAAATGATCTTAGTGGCCCAATTCCGGAGAAGTTGTTTCAAGTTTCAAAATTCAACTTTTCTGGAAACCAGTTAAATTGTAGCGGGAAGTCTCGTGCATGTGCTTCAGATAATACAAACTCAGGTTCTTCAAATAAACCTAAGGTTGGCCTTATAGTTGGAATTATTGCTGGGTTTACCATTGCTCTTCTTTTGGTCGGTGTATTACTTTTCTTGTTCAAGGGTAGATATAAAGGCTACAAGCGCGAAGAGTTCGTTGATGTTGCAGGTGAAGTTGATCGAAGAATTGCATTTGGTCAACTGAAAAGATTTCTATGGAGGGAACTGCAGCATGCTACAGAAAACTTTAGTGAGAAAAATGTTTTAGGACAAGGAGGCTTTGGAAAAGTGTACAAAGGAGTGCTTGGTGATGGCACCAAAGTTGCCGTGAAACGGTTGACTGATTATGAAAGTCCAGGGGGAGATGCTGCTTTTCAGCGTGAAGTTGAGATGATTAGTGTAGCTGTTCATAGGAATCTGTTGCGGCTGATTGGGTTCTGTACAACTCAGACAGAACGCTTATTGGTGTATCCCTTCATGCAGAATTTGAGTGTTGCCTACCGTCTTCGAGAACTTAAGCCTGGGGAGCCTGCTTTAGATTGGCCTACCCGAAAACGCGTGGCATTGGGCACAGCTCGTGGTTTAGAGTATCTTCATGAACATTGCAATCCAAAGATTATTCATAGAGATGTTAAGGCAGCCAATGTATTGCTTGATGAAGATTTCGAAGCAGTTGTTGGCGATTTTGGCTTAGCGAAGCTGGTTGATGTTAGGAAGACTAATGTCACTACTCAAGTTCGAGGGACGATGGGCCACATCGCACCGGAGTACTTATCTACTGGAAAATCATCAGAAAGGACTGATGTTTTTGGTTATGGTATCATGCTTTTAGAACTTGTTACAGGGCAGCGTGCAATCGACTTCTCGCGCTTAGAAGAAGAAGATGATGTTTTACTACTCGACCATGTTAAGAAACTAGAAAGGGAAAAGCGACTGAGTGCTATCGTAGATCGAAATCTAAGCAACTACAACAGTCAAGAGGTGGAGATGATGATTCAAGTTGCATTGCTGTGCACACAGCCATGTTCGGACGACCGTCCAGCAATGTCGCAAGTCGTTCGGATGCTGGAAGGAGAGGGATTGGCAGAGAGGTGGGAAGAATGGCAGCATTTGGAGGTGACTCGCAGACAAGAGTATGATAGACTGCAGAGAAGATTTGAATGGGGAGAAGATTCTATTCATAGACAAGATGCAATTGAGTTGTCTGGTGGAAGATAA 1602 42.51 MGFTGTLSPKIGVLKSLSTLILPGNHITGEIPKDFGNLTNLVSLDLGNNGLTGQIPSSLGNLKKLQFLTLSQNRLTGNIPDSLSSLPGLISLLLDSNDLSGPIPEKLFQVSKFNFSGNQLNCSGKSRACASDNTNSGSSNKPKVGLIVGIIAGFTIALLLVGVLLFLFKGRYKGYKREEFVDVAGEVDRRIAFGQLKRFLWRELQHATENFSEKNVLGQGGFGKVYKGVLGDGTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVAYRLRELKPGEPALDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLSAIVDRNLSNYNSQEVEMMIQVALLCTQPCSDDRPAMSQVVRMLEGEGLAERWEEWQHLEVTRRQEYDRLQRRFEWGEDSIHRQDAIELSGGR 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17989834 18005858 - Sed0001447.3 Sed07g1766 720630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1766 533 SUPERFAMILY Protein kinase-like (PK-like) 191 485 IPR011009 -
Sed07g1766 533 ProSiteProfiles Protein kinase domain profile. 211 489 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1766 533 SMART serkin_6 211 484 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g1766 533 Gene3D Transferase(Phosphotransferase) domain 1 288 504 - -
Sed07g1766 533 FunFam Somatic embryogenesis receptor kinase 1 180 287 - -
Sed07g1766 533 Gene3D Phosphorylase Kinase; domain 1 180 287 - -
Sed07g1766 533 ProSitePatterns Protein kinases ATP-binding region signature. 217 239 IPR017441 GO:0005524(InterPro)
Sed07g1766 533 Gene3D Ribonuclease Inhibitor 1 144 IPR032675 -
Sed07g1766 533 FunFam Somatic embryogenesis receptor-like kinase 1 288 504 - -
Sed07g1766 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1766 533 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 532 - -
Sed07g1766 533 Pfam Leucine rich repeat 16 75 IPR001611 GO:0005515(InterPro)
Sed07g1766 533 Pfam Protein tyrosine and serine/threonine kinase 214 484 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g1766 533 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 8 129 - -
Sed07g1766 533 SUPERFAMILY L domain-like 2 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1764 Sed-Chr7:17989834 Sed07g1766 Sed-Chr7:17989834 2.40E-250 dispersed
Sed07g1766 Sed-Chr7:17989834 Sed13g0948 Sed-Chr13:7181078 3.90E-180 dispersed
Sed07g1765 Sed-Chr7:17989834 Sed07g1766 Sed-Chr7:17989834 2.40E-250 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79514 PF00069 Pkinase 1.30E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1766 - - - 0.0