Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1780 ATGGATCAGTTGGAGGATCACGAAGAGGAAGACATGGAAATAGAGGAAATAGAAGCAGCACCAACAAACCACAAACCACTCCTCCATTTCCAAACCCACCCACTTTCCCGGCTCAACAAGAACCCAACCCCGGTCCACTCGAACTGCCCCCTCCTCCTCTCAAAACCCTCCTACAACTACCGAGAGTGCTTAAAAAACCATGCCCTTGCGGTCGGCGGCCATGCCCTCGACGGCTGCGGCGAGTTCATGCCTGCCGGCCCCGCCGGCTCTCTCGACGCCCTCAAATGTGCAGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGACGCCACAGCCGAAGAGGGACAGTCACTGCCGTTTGTGATGTCGTACTGGCGCGGTGGGTGTGTGCATGTGGCACCACAGCAGCGGATGCTGGCGCTGCCACCCCCACCGACGCCGGGGAGGAAGCGGGTGCGGACGAAGTTCACAGAGGAGCAGAAGGAGAGGATGGCGGCGATGGCGGAGAAGCTGGAGTGGCGGATTGAGAAGAGCGATGAAGCCGCTGTGATGGAATTCTGCAATGAAATCGGGGTGAAGCGCCGTGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTTGTAAGGAATCTTAG 639 57.75 MDQLEDHEEEDMEIEEIEAAPTNHKPLLHFQTHPLSRLNKNPTPVHSNCPLLLSKPSYNYRECLKNHALAVGGHALDGCGEFMPAGPAGSLDALKCAACNCHRNFHRKDATAEEGQSLPFVMSYWRGGCVHVAPQQRMLALPPPPTPGRKRVRTKFTEEQKERMAAMAEKLEWRIEKSDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFCKES 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18483054 18483692 - Sed0011244.1 Sed07g1780 720644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1780 212 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 59 109 IPR006456 -
Sed07g1780 212 NCBIfam homeobox domain, ZF-HD class 149 206 IPR006455 -
Sed07g1780 212 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 109 IPR006456 -
Sed07g1780 212 Pfam ZF-HD protein dimerisation region 58 109 IPR006456 -
Sed07g1780 212 SUPERFAMILY Homeodomain-like 143 208 IPR009057 -
Sed07g1780 212 Gene3D - 143 210 - -
Sed07g1780 212 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 41 207 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Sed07g1780 212 FunFam Zinc-finger homeodomain protein 2 143 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1780 Sed-Chr7:18483054 Sed14g0994 Sed-Chr14:19333041 5.50E-45 dispersed
Sed07g1780 Sed-Chr7:18483054 Sed10g0827 Sed-Chr10:6051719 1.10E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39127 PF04770 ZF-HD_dimer 6.60E-28 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1780 - - - 0.0