Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g1789 ATGGGTTTTGATGATCTTTCTCAAACAAGCTTGGCTTTGGGGTTAGGGCTCTCAGAAGGAGCCAGTTCTCCAATTATTAACAAGTTGAAGAAAAAGCAAGCCAGTTCCTCCTCTAATTCACTTGATTTTGAGCCTTGTGCTCTGACTTTAGGATTTTCAATTATCAACTCTGATGTGGGAGCAGTTGATAATCATCAATTGTATCGCCAAGCCTCCCCCCATAGCAGCGTTGTTTGCTCTTCCTTCTCTGGCAGTGGCGGTAGCGGCGGTCGGGTTAAAAGGGAGAGAGATCTCAGCAGTGAAGAGATTGAATTGGAGAGGGTTTCTCCAAAAGTTAGTGATGAAGATGAAGATGGTTCTAATACTAGAAAGAAGCTTAGGCTTTCTAAAGAACAATCCGCCCTCTTGGAAGAGAGTTTCAAAGAAAATAGCACTCTCAACCCCAAGCAAAAACAAGCTTTGGCGAGACAACTAAATTTACGACCACGACAAGTTGAAGTATGGTTTCAAAATAGAAGAGCTCGAACAAAACTGAAACAAACAGAAGTAGATTATGAGTTCTTGAAGAAATGTTGCGAGACGTTGACTGACGAAAACAGAAGACTACAAAAGGAGCTTCAAGAATTGAAGGCGCTAAAGCTCGCACAGCCTCTCTACATGCACATGCCAGCGGCAACCTTAACGATGTGCCCGTCCTGCGAAAGAGTCGGCGGCAGAGGTGGCAGTGGCCGCGACGGCGCTTCTAAAGCCAAATTTTCAATGGCTCCAAAGCCCCACTTTTACAACACCTTCTCCAATCCTTCAGCCGCATGTTAG 816 44.98 MGFDDLSQTSLALGLGLSEGASSPIINKLKKKQASSSSNSLDFEPCALTLGFSIINSDVGAVDNHQLYRQASPHSSVVCSSFSGSGGSGGRVKRERDLSSEEIELERVSPKVSDEDEDGSNTRKKLRLSKEQSALLEESFKENSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDYEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMHMPAATLTMCPSCERVGGRGGSGRDGASKAKFSMAPKPHFYNTFSNPSAAC 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19034516 19036349 - Sed0025275.1 Sed07g1789 720653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g1789 271 Pfam Homeobox associated leucine zipper 179 213 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g1789 271 Pfam Homeodomain 123 177 IPR001356 GO:0003677(InterPro)
Sed07g1789 271 Gene3D - 127 177 - -
Sed07g1789 271 SMART halz 179 222 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed07g1789 271 SUPERFAMILY Homeodomain-like 120 188 IPR009057 -
Sed07g1789 271 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 12 248 IPR050762 -
Sed07g1789 271 MobiDBLite consensus disorder prediction 90 128 - -
Sed07g1789 271 MobiDBLite consensus disorder prediction 76 128 - -
Sed07g1789 271 ProSiteProfiles 'Homeobox' domain profile. 119 179 IPR001356 GO:0003677(InterPro)
Sed07g1789 271 CDD homeodomain 123 180 IPR001356 GO:0003677(InterPro)
Sed07g1789 271 SMART HOX_1 121 183 IPR001356 GO:0003677(InterPro)
Sed07g1789 271 Coils Coil 185 215 - -
Sed07g1789 271 ProSitePatterns 'Homeobox' domain signature. 154 177 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed07g1789 271 FunFam Homeobox-leucine zipper protein 18 108 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1789 Sed-Chr7:19034516 Sed10g0764 Sed-Chr10:5393669 8.00E-73 dispersed
Sed07g1783 Sed-Chr7:18822624 Sed07g1789 Sed-Chr7:19034516 1.80E-13 proximal
Sed13g1053 Sed-Chr13:8970251 Sed07g1789 Sed-Chr7:19034516 7.30E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39129 PF00046 Homeodomain 2.10E-16 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g1789 K09338 - mdm:114821699 317.39